| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0753 |
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| Symbol | tolC |
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| ID | 4257906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 858647 |
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| End bp | 859954 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638121364 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_736810 |
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| Protein GI | 114046260 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000555232 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0190145 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTA AGATCCGTTC TCTATGCGCA GCATTAACTC TCGCGGCTTC CGCTCAAGCG
GTTCAAGCAG ACGATTTACT GCAAATATAT CAACAAGCAC TGACGAGCGA CCCGCTCGTA
TTACAAGCGC AAGCTCAACG TAATGCCTTG TTTGAAAAGA TCGAACAAAA CCGTGCACCA
CTGTTACCAA CCATCAGTGC TAACGTGGGT TATGACAAAG CATGGAATGA TCCTAAGAAC
GATACCAGTG GATTGACCGG AAGCCTAAAG CTGAATCAAG TGATCTATGA TCACAGTGCT
TGGGTTGGCT TAAGTCTTGC CGAAAAAGCC GCTTCTCAAG CCGACTCAAA CTATGCTTCT
GCACTGCAAA ATTTGATCAC TCGTGTAACT AAAGCCTACT TTGATGTGTT GACGGCGAAA
GATAACTACG AGTTCCAAGG CGCTGAAAAA CGTGCGATTG AACGTCAACT CGAGCAAACT
AAACAACGCT TTGCCGTGGG CTTAACAGCC ATCACCGACG TACATGAAGC GCAAGCTCAG
TATGACTTGG CATCAGCCAC TGAAATTTTG GCTGAAAACA CGTTAGCCAA CAGCTACGAA
GCCCTGCGTG AAATCACAGG TATCGATCAC AAGACCATTA ACGTGCTCGA CACCAACCGT
TTCTCCGCGG TAACGCCAGC ACCTACCTCA TCGAGTGAGT GGCTAAAGAT TGCTGAAACC
AACAGCGTCG ATCTGATGAC TCAACGCATC GGTAAAGATA TCGCCCAAGA GACCATAAGC
CTCTACAAAG CGGGCCACAT GCCATCTCTT AGCCTAAACG CTGGCTATAA CAAAGGGTTA
GAGCAAAAAA CTGGTGACGT GAATGAGCCT GATTTTGACA ATGTGAACGT TGGTGTAAAC
TTAAGCATTC CTATTTTCGA AGGCTTTAAA GTCACCTCAC AGGTCAAAGA AGCGCAATTC
CAATACGTGG AAGCGAGCGA GAAATTAGAG CAAACCTACC GTAGTGTGGT GAAAAACGTT
CGTAACAACT ACAACAACGT AGGCGCTTCA ATCAGCTCAA TCCGTGCTTA TGAGCAATCA
GTGATTTCAT CTGAAAGTGC GTTAAAGGCG ACACAAGCGG GCTTCGAAGT CGGTACTCGT
ACTATTGTTG ACGTACTGAA CCGTACCCGT GACCTGTACG ACTCAAAACG TAAATTGTCG
GATGCACGTT ACAGCTACAT CAACTCAATT ATTGCGTTGA AACAAGCTGC AGGCACCTTA
AATGAAGACG ATGTTATCTC TATCAACAAC GGTCTAAAAG CCGAATAA
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| Protein sequence | MKFKIRSLCA ALTLAASAQA VQADDLLQIY QQALTSDPLV LQAQAQRNAL FEKIEQNRAP
LLPTISANVG YDKAWNDPKN DTSGLTGSLK LNQVIYDHSA WVGLSLAEKA ASQADSNYAS
ALQNLITRVT KAYFDVLTAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ
YDLASATEIL AENTLANSYE ALREITGIDH KTINVLDTNR FSAVTPAPTS SSEWLKIAET
NSVDLMTQRI GKDIAQETIS LYKAGHMPSL SLNAGYNKGL EQKTGDVNEP DFDNVNVGVN
LSIPIFEGFK VTSQVKEAQF QYVEASEKLE QTYRSVVKNV RNNYNNVGAS ISSIRAYEQS
VISSESALKA TQAGFEVGTR TIVDVLNRTR DLYDSKRKLS DARYSYINSI IALKQAAGTL
NEDDVISINN GLKAE
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