| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0697 |
|---|
| Symbol | |
|---|
| ID | 4256874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 817262 |
|---|
| End bp | 819457 |
|---|
| Gene Length | 2196 bp |
|---|
| Protein Length | 731 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638121308 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_736754 |
|---|
| Protein GI | 114046204 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000103778 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00047729 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTG CAAAACGTCG TAATGGCCGA GTCACACTCG GTGCTCATGT TTTAGGTTCG
TTAACGATTG GGATGGCGGT ATCGGCCACT CCCGCGATGG CAACGGAAGG GCAAACGCAA
GTCGTTGATA AGAAAGTCGA GCATATTGAA GTGAACGGTG AGTACTTAGG TTACAACACC
CGTAAAGTGC AATCGGGTAA ATTTACCGAA GACCTGCTCA ATACCGCTAA AACCGTTACC
GTTATCAATC AAGATCTAAT CAAAGATATG GGCGCCCAAA GTTTTACCGA TGCGCTACGT
GCAACTCCTG GTATTACCTT AGGTACAGGT GAGGGTGGAA ACCCCTACGG TGATAGACCT
TTCATCCGTG GTTACGATGC CCAATCTTCA ACCTTTATCA ATGGTATGCG TAATGTGGGC
TCACAAAGCC GCGAAACCTT TAACATTGAA CAAATTGAAG TCCTGAAAGG CCCAAGCTCT
GTATACAACG GCCGTGGTGC CGTTGGTGGT AGCATCAACA TTGTGACTAA AAAAGCGCAA
TCCGAAGACT TTATTAATGC CGACGTTGCC GTTGGAACGG ATTCCCTTAA ACGCGCCAGC
GTCGATGTTA ACCATGTGAT TGCCGATGAG GCTGCGGTCC GTATTAACAT GATGGCCCAC
GATGCCGATA CCCCAGGTCG CGATGAAGTC ACGGGTAACC GTTGGGGCGT AGCGCCTTCG
GTGACCTTTG GTTTAACCAC GCCAACGAAA GTGACGCTCG AATATTATCA CTTTGAAAAT
CATGACATTC CTGATTATGG TATTCCCTAC GATCAGGCTA CGGGCGAGCC TGCGGATGTC
GACCCTGACA ACTTCTATGG TCTGTTGTCG CGGGATTTTC GCGACACTAT GGATGATACG
GCGTCAGTGT TGATAAGCCA TGATTTTAAT AACGACATGC AGTTCACTTC GACCTCCATC
TATAGCCGTA ACAGCAATTA TTATATTGTG ACCAACCCGG ACGACACTAC GGGCAACGTG
GCTAATGGTT ATGTCTGGCG AAACACTAAG TCGCGCCATT CGGTTACTAA GACTCTAGCC
ACTCAATTAC AACTCTCGGG TGAAGCAAAA CTCGCGGGGA TGACGAACCG TTTTGCCGTC
GGTACTGAAC TCAGTAACGA ACGTACTAGT AATTTAAGTT ACACCGTCGA TACGGGTAAT
GGCCGCAACG CGGGTTGTGA TCAGGCGATG CTGGACAACT ACAACTGTAC GCTGCTGGAT
AATCCAAATC CGCACGATCC TTGGGTTGGT ACTATCACCC TCGGCACCGA TGCGACAGTT
ACAGAAACCG ATACTCGCTC GCTTTATGCC TTTAACACCA TTGAGTTAAC CGAAGCGTGG
ATGGTGAACG CCGGGATCCG TTGGGATGAT TACAGCACCA GTGCTGAGAA CTCGACTTCT
CAATTTAGCA ATGATACTGA CTTCTTTAAC TATCAATTAT CGGTACTTTA TAAGCCCGCT
GAAAACGGCA GTATTTATGC TGCGTGGGGC ACTTCTTCTA ACCCTCCGGG GACCTCAAAT
GGTGATGGCG CGGATCGTCT CGGCAGTACC AACGCCGATC TAGAGCCAGA AGATACTGAA
AGCTATGAGT TAGGCACTAA GTGGGACTTC TTTGCCGGAC GTTTATCTTT GAATGGTTCG
GTATTCCAAA TCGAGAAAAA CAACGCTCGG GTCGCGACCT CTGGCGATCG TAATTCGCCG
CAGGAAAACG TCGGTGAGCA AAAGGTGAAA GGTTTTGAAC TTGGCTTCTC CGGTGACTTC
ACTGAGCATT GGCACGGTTT TGGCGGTTAC ACCTATTTGG ATGCGACCTT GGAAAGCAAT
GGTTATAACC AAGCGCAAAA TGGTAACCGC TTCCCCAATA CCGCTAAAAA TAGCTTAAGT
TTATTCACGA CTTACGATGT AACTGAGGAT TTTACTGTTG GTACGGGCGC GTACTACATG
GGTAAAGTTT ATGGTAATAC GGCTAACACG CTGTCGATTC CATCCTACTG GCGTTTTGAT
TTGACTTCAT CCTATAAAAT GAGTCAATTC TTGACCTTAC GTCTGAACGT GCAAAATCTA
ACGGATGAGC GTTATTACGA TAAAGCGTAT ACCGCGCACT TTGCCAATAT GGCCCCTGGT
CGCTTAGTGA TGTTAAGTGC CGATATGCAC TTCTAA
|
|---|
| Protein sequence | MKFAKRRNGR VTLGAHVLGS LTIGMAVSAT PAMATEGQTQ VVDKKVEHIE VNGEYLGYNT
RKVQSGKFTE DLLNTAKTVT VINQDLIKDM GAQSFTDALR ATPGITLGTG EGGNPYGDRP
FIRGYDAQSS TFINGMRNVG SQSRETFNIE QIEVLKGPSS VYNGRGAVGG SINIVTKKAQ
SEDFINADVA VGTDSLKRAS VDVNHVIADE AAVRINMMAH DADTPGRDEV TGNRWGVAPS
VTFGLTTPTK VTLEYYHFEN HDIPDYGIPY DQATGEPADV DPDNFYGLLS RDFRDTMDDT
ASVLISHDFN NDMQFTSTSI YSRNSNYYIV TNPDDTTGNV ANGYVWRNTK SRHSVTKTLA
TQLQLSGEAK LAGMTNRFAV GTELSNERTS NLSYTVDTGN GRNAGCDQAM LDNYNCTLLD
NPNPHDPWVG TITLGTDATV TETDTRSLYA FNTIELTEAW MVNAGIRWDD YSTSAENSTS
QFSNDTDFFN YQLSVLYKPA ENGSIYAAWG TSSNPPGTSN GDGADRLGST NADLEPEDTE
SYELGTKWDF FAGRLSLNGS VFQIEKNNAR VATSGDRNSP QENVGEQKVK GFELGFSGDF
TEHWHGFGGY TYLDATLESN GYNQAQNGNR FPNTAKNSLS LFTTYDVTED FTVGTGAYYM
GKVYGNTANT LSIPSYWRFD LTSSYKMSQF LTLRLNVQNL TDERYYDKAY TAHFANMAPG
RLVMLSADMH F
|
|---|
| |