Gene Shewmr7_0683 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_0683 
Symbol 
ID4254994 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp802258 
End bp804684 
Gene Length2427 bp 
Protein Length808 aa 
Translation table11 
GC content50% 
IMG OID638121296 
ProductRNAse R 
Protein accessionYP_736742 
Protein GI114046192 
COG category[K] Transcription 
COG ID[COG0557] Exoribonuclease R 
TIGRFAM ID[TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0668572 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000463961 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATCAAAG ACCCTCATTT CGAGCGTGAA CAGGATAAGT ACGAAAACCC TATCCCAAGT 
CGTGAGTATA TTATCGAGTA CTTACGTTCT CAAAAATCAC CTATTACCCG TGACAGCATC
GCTGCCGCAC TACAGATCCA TGATGAAGAA CAGTTAGAAG CCCTGCGTCG CCGTTTACGG
GCGATGGAGC GTGACGGTGA ACTGGTATTT ACCCGCGGTC AAAGCTATGG CTTACCTGAA
AAAATGGATC TGATTTCCGG CACAGTCCTT GGGCACAGAG AAGGCTACGG CTTCTTTAAG
CCTGACGAAG GTGGCGACGA TTTATTTATC TCCAATCGCG ATATGCTGAT GTATTTTCAT
GGTGATAAAG TGCTGGCACA AAAAGCCGGT ATGGATCGCA AAGGCCGCCG CGAGGCCCGT
ATTGTGCGTT TGATCCAACC GCGTAGTGCC GCCATTGTCG GACGATATCA TGTCGATAGC
GGCATGGCAT TTGTGATTGC CGATGATAAG CGCATTACCC AAGAGATTTT AATCGCTAGT
GAAGATCGCA ATGGTGCCCG TCAAGGCGAT GTAGTCGTGG TGGAGTTAAC CCGTCGTCCG
GGCCGATTCG TTAAAGCCGC GGGTAAAGTG ACTGAAGTGC TCGGCAAGCA AATGGCGCCA
GGGATGGAAA TCGAGATTGC GCTGCGTAAT TACGATCTTC CCCATACTTG GTCGGCAGCA
ATTGAAAAGA AACTACGCCG TATTCCCGAT GAAGTGACCG AAGCGGATAA GGTCGGCCGT
GTCGATTTGC GCAATCTTCC ACTAGTGACA ATTGATGGTG AAGACGCACG CGACTTTGAC
GATGCGGTAT ATGCAGAAGC TAAACCCAGT GGCGGTTGGC GTCTGTGGGT GGCAATTGCG
GATGTGAGCT ACTATGTGCG TACCGATTCG GCCTTAGATA CCGAAGCCCG TGCCCGTGGT
AACTCGGTGT ACTTCCCGTC GCAAGTGATC CCTATGCTGC CGGAGAAGAT CTCTAACGGC
CTGTGCTCGC TCAATCCCGA TGTCGACCGC TTGTGTATGG TCGCGGAGAT GACGATTTCG
GCTCGCGGTA AGTTATCCGG ATATAAGTTT TATCCAGCGG TGATGCATTC ACATGCGCGC
TTCACTTACA CCCAAGTGGC TGCCATGCTC GAAGGTGGAC CGATTGCGCC TGAACATGAA
GCGCTATTCC CGCATCTACA ATGTTTACAG TCCCTCTATT TAGCGCTCGA TGAACAGCGC
GCTGAGCGTG GTGCGATTGC CTTTGAGACG TTAGAAACGC AGTTTATTTT TAACGACCAG
CGCAAGATCG ATAAAATTGT GCCAAGAGCG CGTAATCAAG CTCATAAAAT TATTGAAGAA
TGTATGATTT TGGCCAACGT ATCGGCCGCT AAGTTTGTGA AAAAGCATAA GGGCGAAATC
CTCTATCGTG TGCATGAGTC ACCCTCTGAA CAAAAGTTGG CGAACTTTAA AGAGTTTCTG
GCCGAGCGCG GTTTAAGCAT GGGTGGCGGA CTCGAGCCAA CGCCAGCGGA TTACCAGAAT
GTGATGCTGC AAATCGCCGA TAGGCCAGAT GCCGAGCTTA TCCAAGTGAT GTTGCTGCGC
TCAATGCGCC AAGCAATCTA CACGCCCGAT AACGAAGGCC ATTTTGGTTT GGCACTGGAA
GAATATGCCC ATTTTACCTC GCCTATTCGT CGTTATCCCG ACTTAGTGTT GCATCGCGTG
ATCCGCTATC TACTGGCGAA GGAGAAAGGC GAAGCCAATG AGAAGTGGAC TCCCGATGGG
GGCTACCATT ATCAGCTGGA TGAATTAGAT CAATTAGGCG AAGAATGTTC TACAACGGAG
CGCCGTGCCG ATGAGGCAAC GCGTGATGTA AGTGACTGGC TGAAATGTGA ATTTATGCAG
GACCATGTGG GTGATACCTT TGAGGCGGTT ATTGCCTCTG TCACTAACTT TGGTTTATTC
GTTCGCTTAA ATGACTTATT TATTGATGGT TTAGTGCATA TTTCTAGCCT GGGCAGTGAT
TATTATCAAT TTGACCCTAT GCGTCAGCGT TTGATTGGTG AGCACACAGG GCAAGTCTAT
CAGGTGGGAG ATCCTGTCAC GGTGAAAGTG GCCGCGGTAA ACTTGGACGA TAGACAAATA
GACTTAATGA TGCTTGGTGA CAGTGGTAAA GGTGGACGCC GCAAGGCGGC ACCGAGTCGA
GATAAGCCCA TGACGGCGCG TGAACGGGTC AACCGTGAAG GCGCTAAAAT GGCGAAGGCG
GCGAAATCGA CAGGTACTAA AGCGAAAGCT GGCTCAGATA AAGCGGGTAG CAAATCTAAG
TCTAAAGCTG GCACTAAGCC TAAGAAAAGC GTAAAAGATT CGGCGAAGAA GCCAAAGGCC
GCAAAGCGGA GCACGAGAAA GAAGTAA
 
Protein sequence
MIKDPHFERE QDKYENPIPS REYIIEYLRS QKSPITRDSI AAALQIHDEE QLEALRRRLR 
AMERDGELVF TRGQSYGLPE KMDLISGTVL GHREGYGFFK PDEGGDDLFI SNRDMLMYFH
GDKVLAQKAG MDRKGRREAR IVRLIQPRSA AIVGRYHVDS GMAFVIADDK RITQEILIAS
EDRNGARQGD VVVVELTRRP GRFVKAAGKV TEVLGKQMAP GMEIEIALRN YDLPHTWSAA
IEKKLRRIPD EVTEADKVGR VDLRNLPLVT IDGEDARDFD DAVYAEAKPS GGWRLWVAIA
DVSYYVRTDS ALDTEARARG NSVYFPSQVI PMLPEKISNG LCSLNPDVDR LCMVAEMTIS
ARGKLSGYKF YPAVMHSHAR FTYTQVAAML EGGPIAPEHE ALFPHLQCLQ SLYLALDEQR
AERGAIAFET LETQFIFNDQ RKIDKIVPRA RNQAHKIIEE CMILANVSAA KFVKKHKGEI
LYRVHESPSE QKLANFKEFL AERGLSMGGG LEPTPADYQN VMLQIADRPD AELIQVMLLR
SMRQAIYTPD NEGHFGLALE EYAHFTSPIR RYPDLVLHRV IRYLLAKEKG EANEKWTPDG
GYHYQLDELD QLGEECSTTE RRADEATRDV SDWLKCEFMQ DHVGDTFEAV IASVTNFGLF
VRLNDLFIDG LVHISSLGSD YYQFDPMRQR LIGEHTGQVY QVGDPVTVKV AAVNLDDRQI
DLMMLGDSGK GGRRKAAPSR DKPMTARERV NREGAKMAKA AKSTGTKAKA GSDKAGSKSK
SKAGTKPKKS VKDSAKKPKA AKRSTRKK