Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0683 |
Symbol | |
ID | 4254994 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 802258 |
End bp | 804684 |
Gene Length | 2427 bp |
Protein Length | 808 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638121296 |
Product | RNAse R |
Protein accession | YP_736742 |
Protein GI | 114046192 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0668572 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000463961 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATCAAAG ACCCTCATTT CGAGCGTGAA CAGGATAAGT ACGAAAACCC TATCCCAAGT CGTGAGTATA TTATCGAGTA CTTACGTTCT CAAAAATCAC CTATTACCCG TGACAGCATC GCTGCCGCAC TACAGATCCA TGATGAAGAA CAGTTAGAAG CCCTGCGTCG CCGTTTACGG GCGATGGAGC GTGACGGTGA ACTGGTATTT ACCCGCGGTC AAAGCTATGG CTTACCTGAA AAAATGGATC TGATTTCCGG CACAGTCCTT GGGCACAGAG AAGGCTACGG CTTCTTTAAG CCTGACGAAG GTGGCGACGA TTTATTTATC TCCAATCGCG ATATGCTGAT GTATTTTCAT GGTGATAAAG TGCTGGCACA AAAAGCCGGT ATGGATCGCA AAGGCCGCCG CGAGGCCCGT ATTGTGCGTT TGATCCAACC GCGTAGTGCC GCCATTGTCG GACGATATCA TGTCGATAGC GGCATGGCAT TTGTGATTGC CGATGATAAG CGCATTACCC AAGAGATTTT AATCGCTAGT GAAGATCGCA ATGGTGCCCG TCAAGGCGAT GTAGTCGTGG TGGAGTTAAC CCGTCGTCCG GGCCGATTCG TTAAAGCCGC GGGTAAAGTG ACTGAAGTGC TCGGCAAGCA AATGGCGCCA GGGATGGAAA TCGAGATTGC GCTGCGTAAT TACGATCTTC CCCATACTTG GTCGGCAGCA ATTGAAAAGA AACTACGCCG TATTCCCGAT GAAGTGACCG AAGCGGATAA GGTCGGCCGT GTCGATTTGC GCAATCTTCC ACTAGTGACA ATTGATGGTG AAGACGCACG CGACTTTGAC GATGCGGTAT ATGCAGAAGC TAAACCCAGT GGCGGTTGGC GTCTGTGGGT GGCAATTGCG GATGTGAGCT ACTATGTGCG TACCGATTCG GCCTTAGATA CCGAAGCCCG TGCCCGTGGT AACTCGGTGT ACTTCCCGTC GCAAGTGATC CCTATGCTGC CGGAGAAGAT CTCTAACGGC CTGTGCTCGC TCAATCCCGA TGTCGACCGC TTGTGTATGG TCGCGGAGAT GACGATTTCG GCTCGCGGTA AGTTATCCGG ATATAAGTTT TATCCAGCGG TGATGCATTC ACATGCGCGC TTCACTTACA CCCAAGTGGC TGCCATGCTC GAAGGTGGAC CGATTGCGCC TGAACATGAA GCGCTATTCC CGCATCTACA ATGTTTACAG TCCCTCTATT TAGCGCTCGA TGAACAGCGC GCTGAGCGTG GTGCGATTGC CTTTGAGACG TTAGAAACGC AGTTTATTTT TAACGACCAG CGCAAGATCG ATAAAATTGT GCCAAGAGCG CGTAATCAAG CTCATAAAAT TATTGAAGAA TGTATGATTT TGGCCAACGT ATCGGCCGCT AAGTTTGTGA AAAAGCATAA GGGCGAAATC CTCTATCGTG TGCATGAGTC ACCCTCTGAA CAAAAGTTGG CGAACTTTAA AGAGTTTCTG GCCGAGCGCG GTTTAAGCAT GGGTGGCGGA CTCGAGCCAA CGCCAGCGGA TTACCAGAAT GTGATGCTGC AAATCGCCGA TAGGCCAGAT GCCGAGCTTA TCCAAGTGAT GTTGCTGCGC TCAATGCGCC AAGCAATCTA CACGCCCGAT AACGAAGGCC ATTTTGGTTT GGCACTGGAA GAATATGCCC ATTTTACCTC GCCTATTCGT CGTTATCCCG ACTTAGTGTT GCATCGCGTG ATCCGCTATC TACTGGCGAA GGAGAAAGGC GAAGCCAATG AGAAGTGGAC TCCCGATGGG GGCTACCATT ATCAGCTGGA TGAATTAGAT CAATTAGGCG AAGAATGTTC TACAACGGAG CGCCGTGCCG ATGAGGCAAC GCGTGATGTA AGTGACTGGC TGAAATGTGA ATTTATGCAG GACCATGTGG GTGATACCTT TGAGGCGGTT ATTGCCTCTG TCACTAACTT TGGTTTATTC GTTCGCTTAA ATGACTTATT TATTGATGGT TTAGTGCATA TTTCTAGCCT GGGCAGTGAT TATTATCAAT TTGACCCTAT GCGTCAGCGT TTGATTGGTG AGCACACAGG GCAAGTCTAT CAGGTGGGAG ATCCTGTCAC GGTGAAAGTG GCCGCGGTAA ACTTGGACGA TAGACAAATA GACTTAATGA TGCTTGGTGA CAGTGGTAAA GGTGGACGCC GCAAGGCGGC ACCGAGTCGA GATAAGCCCA TGACGGCGCG TGAACGGGTC AACCGTGAAG GCGCTAAAAT GGCGAAGGCG GCGAAATCGA CAGGTACTAA AGCGAAAGCT GGCTCAGATA AAGCGGGTAG CAAATCTAAG TCTAAAGCTG GCACTAAGCC TAAGAAAAGC GTAAAAGATT CGGCGAAGAA GCCAAAGGCC GCAAAGCGGA GCACGAGAAA GAAGTAA
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Protein sequence | MIKDPHFERE QDKYENPIPS REYIIEYLRS QKSPITRDSI AAALQIHDEE QLEALRRRLR AMERDGELVF TRGQSYGLPE KMDLISGTVL GHREGYGFFK PDEGGDDLFI SNRDMLMYFH GDKVLAQKAG MDRKGRREAR IVRLIQPRSA AIVGRYHVDS GMAFVIADDK RITQEILIAS EDRNGARQGD VVVVELTRRP GRFVKAAGKV TEVLGKQMAP GMEIEIALRN YDLPHTWSAA IEKKLRRIPD EVTEADKVGR VDLRNLPLVT IDGEDARDFD DAVYAEAKPS GGWRLWVAIA DVSYYVRTDS ALDTEARARG NSVYFPSQVI PMLPEKISNG LCSLNPDVDR LCMVAEMTIS ARGKLSGYKF YPAVMHSHAR FTYTQVAAML EGGPIAPEHE ALFPHLQCLQ SLYLALDEQR AERGAIAFET LETQFIFNDQ RKIDKIVPRA RNQAHKIIEE CMILANVSAA KFVKKHKGEI LYRVHESPSE QKLANFKEFL AERGLSMGGG LEPTPADYQN VMLQIADRPD AELIQVMLLR SMRQAIYTPD NEGHFGLALE EYAHFTSPIR RYPDLVLHRV IRYLLAKEKG EANEKWTPDG GYHYQLDELD QLGEECSTTE RRADEATRDV SDWLKCEFMQ DHVGDTFEAV IASVTNFGLF VRLNDLFIDG LVHISSLGSD YYQFDPMRQR LIGEHTGQVY QVGDPVTVKV AAVNLDDRQI DLMMLGDSGK GGRRKAAPSR DKPMTARERV NREGAKMAKA AKSTGTKAKA GSDKAGSKSK SKAGTKPKKS VKDSAKKPKA AKRSTRKK
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