Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0560 |
Symbol | |
ID | 4258536 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 652649 |
End bp | 656296 |
Gene Length | 3648 bp |
Protein Length | 1215 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638121174 |
Product | putative outer membrane adhesin like protein |
Protein accession | YP_736620 |
Protein GI | 114046070 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01965] VCBS repeat [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATACAGG AAAATAAACT AAGCAAGGTC GCTATCTGTG TAGGATTCGC TTTAACATCC AGTTCAGCTA TGGCTGCAAA CAGTTGGTTA TCACGTGTAA ACACTGTTAC TGAACAGCAA GAAAAATCCA TTGTTTCTGC TAATCATATG CAAGCTGTTT CAGCAATGAG TTCTGATTCG TCGAATGCTG TTTTCGATAT TACTGTATCT TTGTACAATA ATCCCAAAGG TAATGAGCAG AAAGCTTACG AAGAAATCTT AGGTTATTTT GCCGATGGTG TATGTGAGCA ATCGAATGGT GAGCATAAGC TCGGAAAGAT AAGTATTTTC AGAGAAAATA AGCATAGATC TAAGTCGGAT ATTATTTGGG GCGATCGTGA ATGGCCGCGC GCTAATACAG CGGGTTTTGG CGCCAATGGT ATGCATATTT GGTTTGGTGA TGTGTTCCCT AATGGGGCGG GACAAGGTAA AGACCACAAC ATGCTTACCG ATCCCCTCGG AGCTGGCTAT ACCTTAGCAC ATGAGTGGGG ACATTATGCC TACGGTGTAT ATGATGAATA TAAAGGTAAT GCTGTCTCTG GGGCGGCAAA TGCCACGCTT ACCACTGACG TAGCCACAGA TTCCATTATG AGTAATCAAT GGCAAGCGAG AAATGGTGAT ATGAAATGGT TGAATCATTC AACCGCGAAC AATATTGGTG ATGTTAACCG TACCGCACAG GGTCGAGTGT ATGGAAAGAG TGCTTGGGAA GTGCTAACCC AGGACGTGAA AGATGACCCT AAATCTGGTC GCAAAACAGC CCAGCCTACT CGCACTCGAT ACACCACGTT AGCGAATAAT GCACCCGATG CTAGCAACCC TGTCAAAACT GAGTTACCCG CGGCTCAGTC TAGCTGTCGT GATCAGCTGA AGTTTGTGTG GGTGGAAGGT GATATCGATA TGCAGATCGT GATGGACAGA TCGGGTAGCA TGTATGGTTC GCCGATTAAT AACGCAATTC AAGCCGCGAA AACACTTGTA GATGCTACCG CAGAAGGCAG TACTGCGATG GGGTTGGTTT CTTTCTCCAG TCGCTCAAGC GTGAAGCAAG ATTTTGCCGT GCAACAAATA CCTAAGCCGG ATACTGGTAT CAAACAAGCT CTGAAAGCTG CAATTGACAA TATCTATGCC AGCGGTTCAA CTGCACTATT CGATGGTAGC TCTCTTGCTC TTGATAATTT AATTACTTAC CAGACCGCGG CAGCAAGTGG TGCTCCTGGT GTTGTTTTTG TGCTAGCGGA TGGCGATGAT AATAGTTCTA TAAAAAATGA AGCTACAGTC ATCACTGCCT ATCAAAATGC GAATGTCCCA ATCTTTAGTT TCGGCTATGG TTCAGCTTCG CCTACAGGTC CTTTAGTGAC TATGGCGAAT GCTACAGGTG GGAAATACTT TTCTTCACCC ACGACACTCT CGGAAATTAT CGATGCTTTC TTACAAGCAA ATGCCATTGC TACTGATAAT CAAAACTTAG TGTCATCAAC GGTTAATGTG GCAAATGATG CAAGCGCCAC TCAGGAGATT CATATTGACT CTGGTTTAGA TAATGTGAAT ATTTTCGTAA ACCATAAAGG TAGCGCCTCA GATCTACAAC TCACGCTAAA AGACGCCTCT GGAAATAACG TTGCTGGCGT GTCGTTTGAT TGCGTGACTG TAACAGGCGG ACAGTCTTGT AATGTCAATG TGCCTAATAG CGTTATTGCT TCGCTCGGTC ATGGTGAATG GCAACTTGAG TTGACTAATA CAAATGTCAA TCGTCCACTG GATGCGACCG TCAATGTGAG TGCAGAACCT AGTCTTGTGG GGAGTTATAC CGTATCAGTT GAGGGCTTTG CAGGTAATGC CGTTACTTAT CCGAGCCCGA TGATTTTAAC GACGGCGTTA ACCAAAGATA AACTGATCAC TGGAGCTAAC GTCCTTGCGA CCATCAAGGA TCCGATGGGC AACACAACCA ATTTGGAAAT GTTTGATAAT GGACAAGGAG GTGATGCGGT CGCTGGTGAC GGTATTTACT CTGCAGTTGC GCCATACAAT CAGAATGGTA TTTACCAAGT TGAAGTGAAT GTTGATAACA AGGATAGCAA GGCGAGATAT ACTGCCACAG GCTTGTTTAC ACCAACATTG GACGGCTCTG AGCCAGTGCA AGAAGCTTTA CCAACCATTA CGGAAAACTT TGTACGTATC GCGAAAACCT CATTAGTTGT TAGCGACGTG CCTTATTATG ACGGTGATGA CAGTCATTAT ATTGCGACTA AACTCGAGAC GACGAATGCT GGTATCAATG GTGTGATCGA TAGTGCTGGC GACCTTGATT TCTATGTCTT AGAAAACATC GATATGAGTA AAGATCTCGT GGTGCGTGTG ACTGATGCTA GCTTAGGTAT GAAGCCTAAG TTAACTGTGT ACAAACCAGA TGCGTCTACG GCAATAGTGG ATAATGTCAC CCTAGCAACA AATCCATCCG CGACAAATTA TGTGTTCTCA AAGTTAGCTA AGTCTGAACT GGAATCGACT CTGTATGTTG TTGTTAGCCA TGAAGATGAC ACTGCTGCTA CGGGGGGATA TCAAGTCAGT GCGGGTGAAC CGTTAAACAC TGACGTTCCG CCGAACAATG TGCCAGTAGC CAACTCGGAT GCTCTGACAA TTTGGGCTGG CCAAAAAGTG ACAATTTCAC CTTTGGCAAA TGATACGGAT GCAGATGGTG ATACTTTAGT GATCGATAGC GTTACTACTG GAGCTACTAA GGGGGCTGTT GCGGTTTCGG GCAATATTAT CAGTTATGAC TCAGGTAGTG CCTTTGCAAA TGAAACGCCA GGCTCAACCG TATTAGATAG CTTTGCTTAC ATCATTACCG ATAACAAAGG TGGCTTTGCT GAAGCTACAG TTGATGTCAG TGTTAAAATT AATACACCGC CAACAGCTAC GCCTGATGCT ATCAGTGTCA ATGAGAATGC GACTGTTACA ATATCGCCGT TAACGAATGA CACCGATGCC GACGGCCATA CTTTTACCCT CTCGGCTAAA CAAGCTAGTT TGAAAGGTAA GCTGACAGAT AATGGCGATG GTACGTTTAT CTACGATCCT AACGGCCAGT TTAATGATTT GGTCAAAGGT GAAACGGCCA ATGAAGTATT TAGTTACACC ATCACAGATG AAATTGGCGC GACAAGCACA ACTGAAGTGA CTATTAGTGT TGTTGGTATT AATGCGGCTC CTGTTGCTGT CGCTGACACA GCGGTAACGA CTAAGTCAGG GAGCATACAA ATTGACTTAC TTGCAAATGA CACCGATGCA GATGGAGACA CGCTTACTAT CACAGCTATT GATGTTGGCT CTTTGAAGGG CAAGGTCACC AATAATAATG ATGGTACTGT AACTTACAGC CCTAATGGAC AGTTTGGTCA CTTATATCAG GGGCAATCTG CAACAGAGAC TTTTACTTAT ACTATCTCTG ATGGGGATGC TGAAATGACA GCCTCTGTTA CGGTAACTAT TAATGGCGAA GGCCAAGCGC CAGTAGAACC CGAAAAAGAA GGTTCATCAG GTGGTAGCTT GTCGTGGTTT GTATTACTAC TAGCCCCATT AGCATTCATG CGTCGTCGTG TGAAATAA
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Protein sequence | MIQENKLSKV AICVGFALTS SSAMAANSWL SRVNTVTEQQ EKSIVSANHM QAVSAMSSDS SNAVFDITVS LYNNPKGNEQ KAYEEILGYF ADGVCEQSNG EHKLGKISIF RENKHRSKSD IIWGDREWPR ANTAGFGANG MHIWFGDVFP NGAGQGKDHN MLTDPLGAGY TLAHEWGHYA YGVYDEYKGN AVSGAANATL TTDVATDSIM SNQWQARNGD MKWLNHSTAN NIGDVNRTAQ GRVYGKSAWE VLTQDVKDDP KSGRKTAQPT RTRYTTLANN APDASNPVKT ELPAAQSSCR DQLKFVWVEG DIDMQIVMDR SGSMYGSPIN NAIQAAKTLV DATAEGSTAM GLVSFSSRSS VKQDFAVQQI PKPDTGIKQA LKAAIDNIYA SGSTALFDGS SLALDNLITY QTAAASGAPG VVFVLADGDD NSSIKNEATV ITAYQNANVP IFSFGYGSAS PTGPLVTMAN ATGGKYFSSP TTLSEIIDAF LQANAIATDN QNLVSSTVNV ANDASATQEI HIDSGLDNVN IFVNHKGSAS DLQLTLKDAS GNNVAGVSFD CVTVTGGQSC NVNVPNSVIA SLGHGEWQLE LTNTNVNRPL DATVNVSAEP SLVGSYTVSV EGFAGNAVTY PSPMILTTAL TKDKLITGAN VLATIKDPMG NTTNLEMFDN GQGGDAVAGD GIYSAVAPYN QNGIYQVEVN VDNKDSKARY TATGLFTPTL DGSEPVQEAL PTITENFVRI AKTSLVVSDV PYYDGDDSHY IATKLETTNA GINGVIDSAG DLDFYVLENI DMSKDLVVRV TDASLGMKPK LTVYKPDAST AIVDNVTLAT NPSATNYVFS KLAKSELEST LYVVVSHEDD TAATGGYQVS AGEPLNTDVP PNNVPVANSD ALTIWAGQKV TISPLANDTD ADGDTLVIDS VTTGATKGAV AVSGNIISYD SGSAFANETP GSTVLDSFAY IITDNKGGFA EATVDVSVKI NTPPTATPDA ISVNENATVT ISPLTNDTDA DGHTFTLSAK QASLKGKLTD NGDGTFIYDP NGQFNDLVKG ETANEVFSYT ITDEIGATST TEVTISVVGI NAAPVAVADT AVTTKSGSIQ IDLLANDTDA DGDTLTITAI DVGSLKGKVT NNNDGTVTYS PNGQFGHLYQ GQSATETFTY TISDGDAEMT ASVTVTINGE GQAPVEPEKE GSSGGSLSWF VLLLAPLAFM RRRVK
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