Gene Shewmr7_0560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_0560 
Symbol 
ID4258536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp652649 
End bp656296 
Gene Length3648 bp 
Protein Length1215 aa 
Translation table11 
GC content44% 
IMG OID638121174 
Productputative outer membrane adhesin like protein 
Protein accessionYP_736620 
Protein GI114046070 
COG category 
COG ID 
TIGRFAM ID[TIGR01965] VCBS repeat
[TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATACAGG AAAATAAACT AAGCAAGGTC GCTATCTGTG TAGGATTCGC TTTAACATCC 
AGTTCAGCTA TGGCTGCAAA CAGTTGGTTA TCACGTGTAA ACACTGTTAC TGAACAGCAA
GAAAAATCCA TTGTTTCTGC TAATCATATG CAAGCTGTTT CAGCAATGAG TTCTGATTCG
TCGAATGCTG TTTTCGATAT TACTGTATCT TTGTACAATA ATCCCAAAGG TAATGAGCAG
AAAGCTTACG AAGAAATCTT AGGTTATTTT GCCGATGGTG TATGTGAGCA ATCGAATGGT
GAGCATAAGC TCGGAAAGAT AAGTATTTTC AGAGAAAATA AGCATAGATC TAAGTCGGAT
ATTATTTGGG GCGATCGTGA ATGGCCGCGC GCTAATACAG CGGGTTTTGG CGCCAATGGT
ATGCATATTT GGTTTGGTGA TGTGTTCCCT AATGGGGCGG GACAAGGTAA AGACCACAAC
ATGCTTACCG ATCCCCTCGG AGCTGGCTAT ACCTTAGCAC ATGAGTGGGG ACATTATGCC
TACGGTGTAT ATGATGAATA TAAAGGTAAT GCTGTCTCTG GGGCGGCAAA TGCCACGCTT
ACCACTGACG TAGCCACAGA TTCCATTATG AGTAATCAAT GGCAAGCGAG AAATGGTGAT
ATGAAATGGT TGAATCATTC AACCGCGAAC AATATTGGTG ATGTTAACCG TACCGCACAG
GGTCGAGTGT ATGGAAAGAG TGCTTGGGAA GTGCTAACCC AGGACGTGAA AGATGACCCT
AAATCTGGTC GCAAAACAGC CCAGCCTACT CGCACTCGAT ACACCACGTT AGCGAATAAT
GCACCCGATG CTAGCAACCC TGTCAAAACT GAGTTACCCG CGGCTCAGTC TAGCTGTCGT
GATCAGCTGA AGTTTGTGTG GGTGGAAGGT GATATCGATA TGCAGATCGT GATGGACAGA
TCGGGTAGCA TGTATGGTTC GCCGATTAAT AACGCAATTC AAGCCGCGAA AACACTTGTA
GATGCTACCG CAGAAGGCAG TACTGCGATG GGGTTGGTTT CTTTCTCCAG TCGCTCAAGC
GTGAAGCAAG ATTTTGCCGT GCAACAAATA CCTAAGCCGG ATACTGGTAT CAAACAAGCT
CTGAAAGCTG CAATTGACAA TATCTATGCC AGCGGTTCAA CTGCACTATT CGATGGTAGC
TCTCTTGCTC TTGATAATTT AATTACTTAC CAGACCGCGG CAGCAAGTGG TGCTCCTGGT
GTTGTTTTTG TGCTAGCGGA TGGCGATGAT AATAGTTCTA TAAAAAATGA AGCTACAGTC
ATCACTGCCT ATCAAAATGC GAATGTCCCA ATCTTTAGTT TCGGCTATGG TTCAGCTTCG
CCTACAGGTC CTTTAGTGAC TATGGCGAAT GCTACAGGTG GGAAATACTT TTCTTCACCC
ACGACACTCT CGGAAATTAT CGATGCTTTC TTACAAGCAA ATGCCATTGC TACTGATAAT
CAAAACTTAG TGTCATCAAC GGTTAATGTG GCAAATGATG CAAGCGCCAC TCAGGAGATT
CATATTGACT CTGGTTTAGA TAATGTGAAT ATTTTCGTAA ACCATAAAGG TAGCGCCTCA
GATCTACAAC TCACGCTAAA AGACGCCTCT GGAAATAACG TTGCTGGCGT GTCGTTTGAT
TGCGTGACTG TAACAGGCGG ACAGTCTTGT AATGTCAATG TGCCTAATAG CGTTATTGCT
TCGCTCGGTC ATGGTGAATG GCAACTTGAG TTGACTAATA CAAATGTCAA TCGTCCACTG
GATGCGACCG TCAATGTGAG TGCAGAACCT AGTCTTGTGG GGAGTTATAC CGTATCAGTT
GAGGGCTTTG CAGGTAATGC CGTTACTTAT CCGAGCCCGA TGATTTTAAC GACGGCGTTA
ACCAAAGATA AACTGATCAC TGGAGCTAAC GTCCTTGCGA CCATCAAGGA TCCGATGGGC
AACACAACCA ATTTGGAAAT GTTTGATAAT GGACAAGGAG GTGATGCGGT CGCTGGTGAC
GGTATTTACT CTGCAGTTGC GCCATACAAT CAGAATGGTA TTTACCAAGT TGAAGTGAAT
GTTGATAACA AGGATAGCAA GGCGAGATAT ACTGCCACAG GCTTGTTTAC ACCAACATTG
GACGGCTCTG AGCCAGTGCA AGAAGCTTTA CCAACCATTA CGGAAAACTT TGTACGTATC
GCGAAAACCT CATTAGTTGT TAGCGACGTG CCTTATTATG ACGGTGATGA CAGTCATTAT
ATTGCGACTA AACTCGAGAC GACGAATGCT GGTATCAATG GTGTGATCGA TAGTGCTGGC
GACCTTGATT TCTATGTCTT AGAAAACATC GATATGAGTA AAGATCTCGT GGTGCGTGTG
ACTGATGCTA GCTTAGGTAT GAAGCCTAAG TTAACTGTGT ACAAACCAGA TGCGTCTACG
GCAATAGTGG ATAATGTCAC CCTAGCAACA AATCCATCCG CGACAAATTA TGTGTTCTCA
AAGTTAGCTA AGTCTGAACT GGAATCGACT CTGTATGTTG TTGTTAGCCA TGAAGATGAC
ACTGCTGCTA CGGGGGGATA TCAAGTCAGT GCGGGTGAAC CGTTAAACAC TGACGTTCCG
CCGAACAATG TGCCAGTAGC CAACTCGGAT GCTCTGACAA TTTGGGCTGG CCAAAAAGTG
ACAATTTCAC CTTTGGCAAA TGATACGGAT GCAGATGGTG ATACTTTAGT GATCGATAGC
GTTACTACTG GAGCTACTAA GGGGGCTGTT GCGGTTTCGG GCAATATTAT CAGTTATGAC
TCAGGTAGTG CCTTTGCAAA TGAAACGCCA GGCTCAACCG TATTAGATAG CTTTGCTTAC
ATCATTACCG ATAACAAAGG TGGCTTTGCT GAAGCTACAG TTGATGTCAG TGTTAAAATT
AATACACCGC CAACAGCTAC GCCTGATGCT ATCAGTGTCA ATGAGAATGC GACTGTTACA
ATATCGCCGT TAACGAATGA CACCGATGCC GACGGCCATA CTTTTACCCT CTCGGCTAAA
CAAGCTAGTT TGAAAGGTAA GCTGACAGAT AATGGCGATG GTACGTTTAT CTACGATCCT
AACGGCCAGT TTAATGATTT GGTCAAAGGT GAAACGGCCA ATGAAGTATT TAGTTACACC
ATCACAGATG AAATTGGCGC GACAAGCACA ACTGAAGTGA CTATTAGTGT TGTTGGTATT
AATGCGGCTC CTGTTGCTGT CGCTGACACA GCGGTAACGA CTAAGTCAGG GAGCATACAA
ATTGACTTAC TTGCAAATGA CACCGATGCA GATGGAGACA CGCTTACTAT CACAGCTATT
GATGTTGGCT CTTTGAAGGG CAAGGTCACC AATAATAATG ATGGTACTGT AACTTACAGC
CCTAATGGAC AGTTTGGTCA CTTATATCAG GGGCAATCTG CAACAGAGAC TTTTACTTAT
ACTATCTCTG ATGGGGATGC TGAAATGACA GCCTCTGTTA CGGTAACTAT TAATGGCGAA
GGCCAAGCGC CAGTAGAACC CGAAAAAGAA GGTTCATCAG GTGGTAGCTT GTCGTGGTTT
GTATTACTAC TAGCCCCATT AGCATTCATG CGTCGTCGTG TGAAATAA
 
Protein sequence
MIQENKLSKV AICVGFALTS SSAMAANSWL SRVNTVTEQQ EKSIVSANHM QAVSAMSSDS 
SNAVFDITVS LYNNPKGNEQ KAYEEILGYF ADGVCEQSNG EHKLGKISIF RENKHRSKSD
IIWGDREWPR ANTAGFGANG MHIWFGDVFP NGAGQGKDHN MLTDPLGAGY TLAHEWGHYA
YGVYDEYKGN AVSGAANATL TTDVATDSIM SNQWQARNGD MKWLNHSTAN NIGDVNRTAQ
GRVYGKSAWE VLTQDVKDDP KSGRKTAQPT RTRYTTLANN APDASNPVKT ELPAAQSSCR
DQLKFVWVEG DIDMQIVMDR SGSMYGSPIN NAIQAAKTLV DATAEGSTAM GLVSFSSRSS
VKQDFAVQQI PKPDTGIKQA LKAAIDNIYA SGSTALFDGS SLALDNLITY QTAAASGAPG
VVFVLADGDD NSSIKNEATV ITAYQNANVP IFSFGYGSAS PTGPLVTMAN ATGGKYFSSP
TTLSEIIDAF LQANAIATDN QNLVSSTVNV ANDASATQEI HIDSGLDNVN IFVNHKGSAS
DLQLTLKDAS GNNVAGVSFD CVTVTGGQSC NVNVPNSVIA SLGHGEWQLE LTNTNVNRPL
DATVNVSAEP SLVGSYTVSV EGFAGNAVTY PSPMILTTAL TKDKLITGAN VLATIKDPMG
NTTNLEMFDN GQGGDAVAGD GIYSAVAPYN QNGIYQVEVN VDNKDSKARY TATGLFTPTL
DGSEPVQEAL PTITENFVRI AKTSLVVSDV PYYDGDDSHY IATKLETTNA GINGVIDSAG
DLDFYVLENI DMSKDLVVRV TDASLGMKPK LTVYKPDAST AIVDNVTLAT NPSATNYVFS
KLAKSELEST LYVVVSHEDD TAATGGYQVS AGEPLNTDVP PNNVPVANSD ALTIWAGQKV
TISPLANDTD ADGDTLVIDS VTTGATKGAV AVSGNIISYD SGSAFANETP GSTVLDSFAY
IITDNKGGFA EATVDVSVKI NTPPTATPDA ISVNENATVT ISPLTNDTDA DGHTFTLSAK
QASLKGKLTD NGDGTFIYDP NGQFNDLVKG ETANEVFSYT ITDEIGATST TEVTISVVGI
NAAPVAVADT AVTTKSGSIQ IDLLANDTDA DGDTLTITAI DVGSLKGKVT NNNDGTVTYS
PNGQFGHLYQ GQSATETFTY TISDGDAEMT ASVTVTINGE GQAPVEPEKE GSSGGSLSWF
VLLLAPLAFM RRRVK