Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0553 |
Symbol | |
ID | 4258529 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 642277 |
End bp | 643635 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638121167 |
Product | MATE efflux family protein |
Protein accession | YP_736613 |
Protein GI | 114046063 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.136219 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGACA GACACGGGCT GCTTAGCGCG CCAATTGGTC GTGTACTGCT CAACATGAGC CTCCCTAACT TGATTGGCAT TATGACCATT CTCGGGTTTA GCCTCGCTGA CACTTTTTTT ATCAGCCAGC TAGGGACAGA AGCCTTAGCG GCGATCAGTT TTACCTTCCC TGTCACTTTG ATTATTTCCA GCATTGCCAT TGGCATTGGT GCCGGGGTAT CCACGAATCT TGGCCGATTG ATTGGCTCGG GTAACGCCAC GCGGGCCAAG GTGTTTTTAC ACGATGCGCT GCTGCTGACC TTTATCCTGA TCGCCAGTTT ATCCGCCCTC GGCAGTATTT TTATCACACC ACTTTTTAGC TTGCTCGGCG CCAATGACAC CAGCCTGCCG CTCATTCATG ACTATATGAT GTATTGGTAT GTGGGCGCGC CGCTGTTGGT GTTATTGATG GTAGGCAACC AAGGCTTACG CTCAACCGGG GATACTCGCT CACCCGCAAT GATTATGACG CTGGCGGCGA TTATTAACTT GATCCTCGAC CCTTTGCTTA TTTTCGGTAT TGGGCCTTTT CCACGCTTAG AGATCCAAGG AGCGGCGATT GCCACCCTGT TCTCGTGGCT TATTGCCCTG TCACTCTCGG GCTATTTGCT GATTATTAAG CGCCGAATGC TTGAACGGGC CGCATTTGAT ATCGATAGAA TGCGCGCTAA CTGGAGCAAA CTCGCCCATA TCGCCCAGCC CGCGGCCCTG ATGAATTTAA TTAATCCACT CGCCAATGCG GTGATTATGG CGATGCTGGC CCATATCGAC CACAGCGCCG TAGCCGCCTT TGGTGCGGGC ACACGCTTAG AATCCGTTCT CTTGATTGTA GTGATGGCGC TCTCCTCGAG CCTAATGCCG TTTATCGCGC AAAACCTTGG TGCTGGCCAA ACCCAAAGGG CGAAACAGGC TTTGCTGTTA TCGCTTAAAT TTATCTTAGT ATTCCAGACC TTACTCTATA TTCCGCTGGC GTTTTTCGCC CAGCCACTGG CGAGTTTATT CAGTACCGAT CCACAGGTGT TAGAGTGGTT AAGCTTCTAT ATTTTGATCT TGCCCTGTGC CTATGGCCCG CTCGGCATAG TGATTATCTT TGCCACGGCG CTCAATGCGT ACCACAGACC CATGAGCTCG CTAGTGATTA ACCTATGCCG CTTAGTGCTG CTGATGCTGC CGCTGGCGGC GCTGGGATCC TATATCGATG GCGTGAAAGG CTTATTGCTC GCACTCCCCA TCACCAACCT CTTGATGGGG ATTGCCTGTT ATTATCTAGC CCAAAGGATT TGTGAACCTA CCAAGGTCAC GACCGCCGAT GCTATCTAA
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Protein sequence | MQDRHGLLSA PIGRVLLNMS LPNLIGIMTI LGFSLADTFF ISQLGTEALA AISFTFPVTL IISSIAIGIG AGVSTNLGRL IGSGNATRAK VFLHDALLLT FILIASLSAL GSIFITPLFS LLGANDTSLP LIHDYMMYWY VGAPLLVLLM VGNQGLRSTG DTRSPAMIMT LAAIINLILD PLLIFGIGPF PRLEIQGAAI ATLFSWLIAL SLSGYLLIIK RRMLERAAFD IDRMRANWSK LAHIAQPAAL MNLINPLANA VIMAMLAHID HSAVAAFGAG TRLESVLLIV VMALSSSLMP FIAQNLGAGQ TQRAKQALLL SLKFILVFQT LLYIPLAFFA QPLASLFSTD PQVLEWLSFY ILILPCAYGP LGIVIIFATA LNAYHRPMSS LVINLCRLVL LMLPLAALGS YIDGVKGLLL ALPITNLLMG IACYYLAQRI CEPTKVTTAD AI
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