Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0551 |
Symbol | |
ID | 4258527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 639985 |
End bp | 641067 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638121165 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_736611 |
Protein GI | 114046061 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.139954 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCAT ATCGACTTCT TCCCTTAGCG GCGTTGTTGC CCGCCCTACT GACTGCCTGC ACTCCCGCGG AAAGTTCAGT ACAGGCAACC GCCATTCGCC CCGTCAAACT CTTTGAGGTG GTGCAACTCG AAGGAGGAGA TTTTAGGACG TTTCCCGCTC GCGTCAGTGC CAATAGTCGC GCCGAATTGT CCTTTAGGAT TTCAGGAGAA CTGACTGATT TGGCCCTAGT GGAAGGGCAG CAAATCCGCC AAGGTAGCTT ACTGGCCAAA TTGGACGACA GAGATGCCCA TAATAATTTA ATGACCCGCG AAGCCGAGCA TGAACTCTTG GCAGCGGATT TTCAGCGTAA AACCGAGCTA CTCAAGCGCA AGCTAATCTC TCAAGCCGAG TTTGATAGCA CCCAGGCACA GCTCAAATCG GCAAAAGCCG CATTGGCCGC CGCCCGTGAC CAATTAAGCT ATACCAAGCT GATTGCTCCC TTTAGTGGCA CAGTGGCAAA ACGTTTAGTG GACAACCACC AAATCGTACA GGCCAACCAA GGGATTTTAA CGCTGCAAAA CAACAACCTG CTCGATGTTA GCATTCAAGT CCCCGAGGCG ATGGCCGCCA GCTTAAATAC CTATGTGCAG CAGCAAAACT TTACCGCTAA GGTGCGTTTT AGCGCATTAG CGGGAATGGA GTTTGATGCG AAATTCAAGG AATACTCAAC TCAAGTCACC CCTGGCACTC AAGCCTATGA AGTGGTGTTC TCCTTACCTC AACCGAAAGA TATTCAACTA CTTCCGGGGA TGAGCGCCGA GTTAACCCTA GCCTTAGTTA AAACACCAGG TCAAACCGCT TCGGCCATAG TGCCAGTTAC TGCCATTGAT AAACGCGATC AAGACGGCCA AGTTCAAGTG TGGGTGTATC AGTCTCAGTC GGGCGAAATC AAACCCACAG CGGTCACCTT AGGTCGTGTC ACCAGTCAAG GTATCGAAGT ATTAGGCGGC ATCAACAAGG GCGATTTAAT TGTGAGTGCG GGTCTATCCC AATTAGCCGA CGGAATGAAA GTGAAGCCAC TACGCTGGCA ACGCGGAGTG TAA
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Protein sequence | MKSYRLLPLA ALLPALLTAC TPAESSVQAT AIRPVKLFEV VQLEGGDFRT FPARVSANSR AELSFRISGE LTDLALVEGQ QIRQGSLLAK LDDRDAHNNL MTREAEHELL AADFQRKTEL LKRKLISQAE FDSTQAQLKS AKAALAAARD QLSYTKLIAP FSGTVAKRLV DNHQIVQANQ GILTLQNNNL LDVSIQVPEA MAASLNTYVQ QQNFTAKVRF SALAGMEFDA KFKEYSTQVT PGTQAYEVVF SLPQPKDIQL LPGMSAELTL ALVKTPGQTA SAIVPVTAID KRDQDGQVQV WVYQSQSGEI KPTAVTLGRV TSQGIEVLGG INKGDLIVSA GLSQLADGMK VKPLRWQRGV
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