| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0531 |
|---|
| Symbol | |
|---|
| ID | 4255781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 607880 |
|---|
| End bp | 610732 |
|---|
| Gene Length | 2853 bp |
|---|
| Protein Length | 950 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638121145 |
|---|
| Product | excinuclease ABC subunit A |
|---|
| Protein accession | YP_736591 |
|---|
| Protein GI | 114046041 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0391224 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGA TTGAAATACG CGGCGCACGG ACCCACAATC TCAAAAATAT CAACCTGACT
ATCCCAAGGG ATAAGTTAAT CGTTATCACG GGGTTATCGG GTTCAGGCAA ATCTTCCCTA
GCATTTGATA CTTTATATGC CGAAGGCCAA CGACGTTACG TTGAGTCTCT TTCTGCCTAT
GCCCGCCAAT TCTTAAGCTT GATGGAAAAG CCCGATGTCG ACCATATCGA AGGCTTGAGC
CCGGCGATTT CCATCGAACA AAAATCGACG TCCCATAACC CGCGCTCCAC TGTCGGGACT
ATCACCGAAA TTTACGACTA TCTGCGTCTG TTGTTTGCCC GTGTAGGCGA ACCGCGCTGC
CCAACTCACG GCCAACCCCT TGCGGCGCAA ACCGTGAGTC AGATGGTCGA TAAAGTGTTA
GAAATGCCCG AAGACAGCCG CTTGATGCTG CTGGCGCCCG TGGTCAACGG TCGTAAGGGT
GAGCACGTAA AATTACTCGA AGGCTTATCG GCGCAGGGGT ATATCCGCGC CCGTATCGAC
GGTGAAGTCT GCGACTTAAC CGATCCACCA GCACTCGATT TACACGTTAA GCACACCATC
GAAGTGGTGG TCGACCGCTT TAAAGTCCGC AGCGATATTC AGCAACGTCT CGCCGAATCC
TTTGAAACCG CGCTCGAACT CTCCGGCGGA ATTGCCGTGG TCGCCAGCAT GGATGAAGGC
AACACTGAAG AATTAATCTT CTCGGCTAAC TTCGCCTGTC CGCACTGCGG TTATTCGATG
GCCGAGCTTG AGCCACGGAT CTTCTCCTTT AACAACCCAG CTGGCGCTTG CCCAACCTGT
GATGGTTTAG GGGTACAACA ATTTTTCGAC CCAGACAGAG TGATCACTAA TCCTGAGTTA
TCCCTTGCGG GCGGCGCGAT TCGTGGCTGG GATAGACGTA ACTTCTATTA CTTCCAGATG
CTGAGTTCGC TCGCCGACCA CTATAAGTTC GATGTCGAAG TTCCCTTCGA ACAGCTGTCG
GATAAGGTGA GAAAAATCGT CCTCTACGGC TCAGGCAAAG ACAGCATCGC CTTCAAATAC
ATCAACGACC GTGGTGATGT GGTGGTGCGC ACTCACCCCT TCGAAGGCAT CTTAAATAAT
ATGGACCGGC GCTACCGCGA GACCGAAAGC AACGCGGTGC GCGAAGAATT AGCCAAGTTT
ATCAATACTC AAGCCTGCCA AAGCTGTGGC GGGTCGCGCT TGCGCGAAGA AGCCCGTAAC
GTGTTTATTG GCGACCTAAA CCTACCCAAA CTCACCGTTT GGTCGATAGG TGAAGCCCTA
GACTACTTCG ACAAACTCGA GTTCAGCGGC CAAAAGGCAC AGATCGCCGA GAAGGTACTG
AAGGAAGTGC GAGATCGCTT AGGCTTCCTG GTTAACGTCG GCCTCAACTA TTTAAGTCTG
TCGCGTTCGG CCGAAACCCT CTCAGGCGGT GAAGCGCAGC GTATTCGCCT CGCCAGCCAA
ATCGGCGCAG GACTCGTCGG CGTCATGTAT GTGCTCGACG AGCCTTCTAT CGGCTTGCAC
CAGCGAGATA ACGAACGGTT ATTGCAGACC TTAATCCACC TTCGGGATTT AGGTAACACA
GTAATTGTGG TGGAGCATGA TGAAGATGCG ATTCGTATTG CGGATCATAT TATCGATATC
GGCCCCGGCG CTGGGGTGCA TGGCGGCGAA GTGATTTGCG ACGGCCCGAT TGAGAAAATT
GTCGCCTGCG ACGAGTCCGT GACTGGCCAA TATATTTCGG GCAAACGCAA TATCCATATC
AGCACTCCAC GTACGCCTTA CGATCCAAAA CAAGTGATTG AGCTTTACGG CGCTCGCGGC
AATAACCTGC GCAATGTCGA CTTAACGGTT CCCGTAGGCC TGTTCACCTG CGTGACCGGG
GTATCGGGTT CGGGTAAATC GACGCTGATT AACGATACCT TCTTTAGAAT TGCCCATAAG
CAACTCAACG GTGCCACAGT CGATGAGCCC GCGCCATACG ATCGCATCGT CGGCATGGAG
CAATGCGATA AAGTGGTCGA TATCGACCAA AGCCCGATTG GTCGTACTCC GCGCTCTAAC
CCCGCCACTT ATACTGGCAT CTTTACGCCT ATTCGGGAGA TTTTTGCTGG AACGCAGGAG
TCCCGTACCC GTGGTTATCA GGTGGGCCGT TTCTCCTTTA ACGTGAAAGG CGGTCGCTGT
GAGGCCTGCC AAGGTGATGG CTTAATTAAG GTCGAAATGC ACTTCCTGCC CGATGTGTAT
GTGCCTTGCG ATGCCTGTAA GGGTAAACGC TATAACCGCG AAACCTTAGA GGTGCGCTAC
AAGGGTAAGA ACATCCACGA AGTGCTGCAA ATGACAGTGG AAGATGCGCG GGAGTTTTTC
GATGCCGTGC CAGCCATTGC CCGTAAACTG CAAACCCTGA TGGATGTGGG TTTGTCCTAC
GTACGTTTAG GCCAGAGCGC GACCACGCTG TCGGGAGGTG AAGCCCAAAG GGTGAAACTC
GCGAAGGAAC TCTCTAAGCG CGATACGGGT AAGACCTTGT ATATTCTGGA TGAACCGACA
ACGGGCTTGC ACTTTGCCGA TATCCAATTG CTGCTCGATG TGCTGCATCG CCTCAAATCC
CATGGCAATA CTATCGTGGT GATTGAGCAT AATCTGGATG TGATTAAAAC CGCAGACTGG
ATTATCGACT TAGGTCCAGA AGGCGGCGGT GGCGGCGGCA CTATCCTAGT AACTGGTACG
CCAGAAGAGG TGGCAGAGCA TCCAACGTCC CATACCGCGC GCTTCCTAAA GCCGCTGCTG
GAAAGGGATG CTAAGCTAGC CAAACAGTCA TAA
|
|---|
| Protein sequence | MDKIEIRGAR THNLKNINLT IPRDKLIVIT GLSGSGKSSL AFDTLYAEGQ RRYVESLSAY
ARQFLSLMEK PDVDHIEGLS PAISIEQKST SHNPRSTVGT ITEIYDYLRL LFARVGEPRC
PTHGQPLAAQ TVSQMVDKVL EMPEDSRLML LAPVVNGRKG EHVKLLEGLS AQGYIRARID
GEVCDLTDPP ALDLHVKHTI EVVVDRFKVR SDIQQRLAES FETALELSGG IAVVASMDEG
NTEELIFSAN FACPHCGYSM AELEPRIFSF NNPAGACPTC DGLGVQQFFD PDRVITNPEL
SLAGGAIRGW DRRNFYYFQM LSSLADHYKF DVEVPFEQLS DKVRKIVLYG SGKDSIAFKY
INDRGDVVVR THPFEGILNN MDRRYRETES NAVREELAKF INTQACQSCG GSRLREEARN
VFIGDLNLPK LTVWSIGEAL DYFDKLEFSG QKAQIAEKVL KEVRDRLGFL VNVGLNYLSL
SRSAETLSGG EAQRIRLASQ IGAGLVGVMY VLDEPSIGLH QRDNERLLQT LIHLRDLGNT
VIVVEHDEDA IRIADHIIDI GPGAGVHGGE VICDGPIEKI VACDESVTGQ YISGKRNIHI
STPRTPYDPK QVIELYGARG NNLRNVDLTV PVGLFTCVTG VSGSGKSTLI NDTFFRIAHK
QLNGATVDEP APYDRIVGME QCDKVVDIDQ SPIGRTPRSN PATYTGIFTP IREIFAGTQE
SRTRGYQVGR FSFNVKGGRC EACQGDGLIK VEMHFLPDVY VPCDACKGKR YNRETLEVRY
KGKNIHEVLQ MTVEDAREFF DAVPAIARKL QTLMDVGLSY VRLGQSATTL SGGEAQRVKL
AKELSKRDTG KTLYILDEPT TGLHFADIQL LLDVLHRLKS HGNTIVVIEH NLDVIKTADW
IIDLGPEGGG GGGTILVTGT PEEVAEHPTS HTARFLKPLL ERDAKLAKQS
|
|---|
| |