| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0484 |
|---|
| Symbol | |
|---|
| ID | 4255611 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 550173 |
|---|
| End bp | 554426 |
|---|
| Gene Length | 4254 bp |
|---|
| Protein Length | 1417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638121098 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_736544 |
|---|
| Protein GI | 114045994 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3164] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.814446 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCAACGC TTTTTACTGC GAAAAAACTA AGCCGTTTTT GTTGGCAATT ACTGGCGTTG
ATCTTAGTCT TGTTTGCCCT GACGGTAAGC TTGATCCGCG GATTATTGCC CCAGGTCGAT
GGTGTGCGTC AGCACTTAGT TGAGTATGTA AAAAGCGAAT ATCAAATTGA TGTGCAGGTC
GGCGAGTTAT CTGCCCAGTG GCAGGCTTTT GGCCCAGCGG TGACGGTTGA TAATCTGGTG
ATCCCGCCGC AGGAAAAACT CCCAGTTGCA GTGCTGGTGA GAAACGTCCA AATCAAATTG
GATTTTTGGC AATCGCTGCT GACCACCAGT CCACGCATCG AGGATGTTAA TTTCGATGGG
GTTCATATTG CGCTCGATAT CGACAAATTA TCGGGCACTA AGGCGCAGGG CGCGGCCAAG
CAAACTTCGC AAACCGATTG GCTGTATAAG TTACTCCTAA AGCAGCTCGA GCGTTTTTCG
CTGACGGATG CCTCGGTGCA ACTGCTTAGT TTGCAGCATG AATATCGACC CATCCATATT
CGCCACCTCA ATTGGCGTAA TAGTGGCGAG CGTCACCGTG GCGCTGGGGA GATTTACCTC
GATAATAATG CCCAGGAAAA CGAGTCGCTA AGTTTGCAGC TCGATATTCA TGGCGATGCG
ACCGCGCCCG ATACCCTGAA AGGGCAAATT TACCTCGCGG CTCAGTCCTT AGATTTGGGC
GAATGGGCAT CGCGCCAACC TAATCCCTAT GATCCGAGCA AGAAATTACC CTTAGAAGGG
GTAGTCAATC TCAAGGCATG GTTTGATTTT GCCCACCGCA GTGTCAGTGC CGGACTGGTT
CAGTTTGAAC CCAGTTGGTT GCAATGGTCG ATGGAAGGGG AGCCGCAAAA GTTTGAGATC
CAGTCCGGTA GCATTAGTTG GCTACCCAAG GAGACAGGTT GGGAAATTAG CAGTACCGAT
CTGGATTTTG TCACTAACGG TGAACATTGG CCCGACCTTA AGCTCGCGGC AAAGCAACAA
GACGATGCCT TATATGCCTA TGTAAGTCGG GTCGATTTAC CTACTTTATT TCCACTCTTA
CCATTATTTC CTGGTGTCGA TTTAGCCGTA CTGCAACAGT GGTTTCACCT CGCTCCTGAG
GGGAGTGTCG GGCCGATTCG CCTCTATCAA AGCGCCAAGC AACCCTTGCT GGCCAGTACT
CATATCAAGC AATTGCATTG GCAGAAAGTC GAAGGCATAC CTAACACCAA CCCTTTAGAT
TTAGCATTAC AGTGGCAGCA TGACAGTTTA GTGTTTTCAC TGCCCGAGCA GACCTATACC
CTCGATTTTG GCGAACAGTT CTCAGCCCCT TTAGTGCTGC ATGGCGCTGC GTTAACCGGC
GCTTTCGACA CCCAAAAGGC GACCTTATCC GTGCCTCAGG TGCAGCTTGA AAACGACGAT
ATTGGGGTTT CGGCCGCCTT AAAACTGGAT TTTAGTGCCG CAGCCAGTAT GTCACTCGCC
GCCAATGTGG CCGTCAAAAA TGCCGCCAAT GCGGATAGAT ACTTCCCCGT CAAAGCCATG
GGTGAGGCGC TGGTGGAATA TTTGGATGGT GCTATCAAGG CGGGTCAGAG CCAAAACGCA
CAAGTGTTAT GGCAGGGCGC CTTAGCGCAT TTTCCCTTCG AGGATAATAG CGGGGTCTTC
CAAGCGGCCT TTTCCTTAGA CAACGCCGAG TACCAATTTC AACCCGATTG GCCTGCTGTC
ACTGCGCTTT CACTCGATGC CTTATTTGAA AATGCCCGCA TGGATATCTG GGTTAACCAA
GGCAAATTGA TGAATGTGGT GGCCGATGGT GCCCATGTGT TTATCCCCGA ATTAGGCGAG
CATTCGCTGT TAAAAATTCA GGCCGATCTC GCCACCAATG GTAGCGCCGC GACCCAAGTA
TTGCAGGCAT CACCGCTCGC CGATACTGTG GGCAAGACCT TAAGCGTCGT ACAAGTGCAG
GGCGCGGTCA CAGGTAGTTT AGACATCTGC ATTCCCTTAT ACGAGGGTGA GGCCGAGGAT
ATTCGTGGTC AAATTGCCTT TGATAATACG CCAGTCTTTA TTGCCCAGCC TGGTTTGCAG
CTTAAGGCGG TGACGGGCAC AGTGCAGTTT GCGAATGAGA TTGTAGAAGG CAAAGGCATT
CAATCGCGCC TATTTGAGCA GCCCTTCGAA TTTAGTTTTG CCACTAAACC CGAAGGCAAA
GATTTTGCGC TTAATGTGGA TATGAAGAGC CGTTGGGATC TCAGCCGATT ACCACAAGAG
CTGCAAAATC CCTTGAGTGA GTTTTACCAA GGTAAAGTCG CTTGGGGCGG CAACTTGAAT
ATGGTGTTCG ACGATCAAGG CTATCAAATT CAAGCCAATG TGGGTTCGGA TCTGGTTGGC
GCAAGCTTGA AATTACCGGG TGTCTTTGCA AAACCCGAAG ACGAACCTAG ACCCCTAATG
GCGGAGTTTT CTGGCGATCA ACAAACGGCG ACGCTCAGGG TCAAACTGGA TAAGCAGGCC
GAGTTTATTG GTGGCTTCGA GGCCGAAAAG GGCACCCAAT TTAGCTATTT TGATTTGTTA
TTGGGTCGAC TCTTCGATGT AGGCGAGGTG TCCAATACCG AGCAGGGACA TATCCAGATC
GATGTGACCA GCGGCAAACT CATCAATTGG TTGCCAGTGA TCAATGCCTT TGTCGGCACT
GATCATCAGC CTGTCCGTAC TGGTATTTTG GTCGAGGAGG CGAGCCATTC AGCTTTGTTC
CCCTCGGTTG CTGGGATTGA TGCCAATATC GGCAAGTTTG ATTTATTGGG GCAAGGGCTG
ACCGAGCTTA GATTGAGTGC TAAGCCAAAC GAAAATGGCT GGCGTTTCGA TGCCGTGGCC
AGCGAGTTTG AGGGCACGGT CGATTTTTAT CCGAATTGGA TGACCCAGGG CTTAAAAGTT
ACCGCCAATA AGTTTTATTT CTCCCCCGAA GTTAAACCCG AAGGGGAAGG CGATTTCGCT
GCGGATCAGG TGCTCACCAA TTTACCGCCC GTCGCGGTGA ATGTGGAAGA TTTTCGTTTC
TTCGATAAAC CCTTTGGCAA GCTGGTGCTG CAGGCGAGCC CACAAGCTTC GGGCTATCGA
ATTCAAACCC TGTCTTTGAC GACGCCAGAG GTGTCATTAC AGGGGAATGG TATTTGGCAG
CAACAGAATG GTCAGAACCA AACTGAATTA ACGGTGAGTT TGAACGCCAG CCAGTTTAAT
TATTTGAGTC AGCAATTAGG CATCGACCCT GGTGTGAATG AGGCGCCACT TAAGGTGAAT
GCCGAGCTAG CTTGGCAGGG GGCGCCCTAT GCGTTTTCCC TCGAAACCTT AAACGGAAAA
ATGAAGTTTG AACTGGGTAA GGGGCATCTA TCCCAAGTGA GCGATAAGGG CGCGCGGATT
TTTTCTCTGT TCAGCCTCGA CTCCTTAGTG CGTAAGTTAT CCTTAGATTT CAGTGATGTG
TTCGGCCAGG GCATGTACTT CAACTCCTTT AGTGGCAATC TACAAATCGA TAATGGTGTG
GTTAAAACCA CGGATACCGA AATGGATGCG ATTGCGGGCA ATATGAAGGT GCGTGGCTAT
ACGGATCTCA CCAGCGAAAG CTTAAATTAC GATATCCGCT TTGTGCCGCA GTTGGCGTCG
AGTGTGCCGA CTGTAGTGCT GATCAGCACC AGCGCTTGGA CACTAGGCCT TGGCGCTTTT
GCGCTTACCA AGGTACTCGA ACCTGTGATT GAGGTGATTT CTGAAATCCG TTTCCGTGTG
ACAGGCACTA TGTCTGAGCC TGTGGTGGAA GAGCTCGAGC GTAAAAGTAA AGAGATCGAG
ATCCCCGAGT CGATTCTGCC CATGGTGGGT GGCGAATTGC CTGCGCCAAC CGAGGGCGCT
GAGCCTAAGA CTGATGCGGC GCCTGTCAAG AATAGCGACC CGATTAAGAC AAATGCTACG
CCACACGTCG AGCCTGAAAA AAACAATGAG CAGCCTGCGC CAGATGCTGA TAAACCTAAA
GTTGAACCAG TAAAAGCGGT CGATGAAGAT ACATCGCCGC AAGCGCCAAC GCTCCCCAAG
GTAGAGCCTG CTGAGCCGCC CAAAGCCGAA CCAGAACAGC CTAAGCCTGT GAGCCCTAAG
GTGGCATTGT CGATAAACAC AATTCAAGGA GATAGTCATG CGCATCAGCC TGTTGCAATG
TCAGAGCAGT CGCGACGTCA GCGCGAATCT GTTGTTTATC GAATCGCAGC TTGA
|
|---|
| Protein sequence | MATLFTAKKL SRFCWQLLAL ILVLFALTVS LIRGLLPQVD GVRQHLVEYV KSEYQIDVQV
GELSAQWQAF GPAVTVDNLV IPPQEKLPVA VLVRNVQIKL DFWQSLLTTS PRIEDVNFDG
VHIALDIDKL SGTKAQGAAK QTSQTDWLYK LLLKQLERFS LTDASVQLLS LQHEYRPIHI
RHLNWRNSGE RHRGAGEIYL DNNAQENESL SLQLDIHGDA TAPDTLKGQI YLAAQSLDLG
EWASRQPNPY DPSKKLPLEG VVNLKAWFDF AHRSVSAGLV QFEPSWLQWS MEGEPQKFEI
QSGSISWLPK ETGWEISSTD LDFVTNGEHW PDLKLAAKQQ DDALYAYVSR VDLPTLFPLL
PLFPGVDLAV LQQWFHLAPE GSVGPIRLYQ SAKQPLLAST HIKQLHWQKV EGIPNTNPLD
LALQWQHDSL VFSLPEQTYT LDFGEQFSAP LVLHGAALTG AFDTQKATLS VPQVQLENDD
IGVSAALKLD FSAAASMSLA ANVAVKNAAN ADRYFPVKAM GEALVEYLDG AIKAGQSQNA
QVLWQGALAH FPFEDNSGVF QAAFSLDNAE YQFQPDWPAV TALSLDALFE NARMDIWVNQ
GKLMNVVADG AHVFIPELGE HSLLKIQADL ATNGSAATQV LQASPLADTV GKTLSVVQVQ
GAVTGSLDIC IPLYEGEAED IRGQIAFDNT PVFIAQPGLQ LKAVTGTVQF ANEIVEGKGI
QSRLFEQPFE FSFATKPEGK DFALNVDMKS RWDLSRLPQE LQNPLSEFYQ GKVAWGGNLN
MVFDDQGYQI QANVGSDLVG ASLKLPGVFA KPEDEPRPLM AEFSGDQQTA TLRVKLDKQA
EFIGGFEAEK GTQFSYFDLL LGRLFDVGEV SNTEQGHIQI DVTSGKLINW LPVINAFVGT
DHQPVRTGIL VEEASHSALF PSVAGIDANI GKFDLLGQGL TELRLSAKPN ENGWRFDAVA
SEFEGTVDFY PNWMTQGLKV TANKFYFSPE VKPEGEGDFA ADQVLTNLPP VAVNVEDFRF
FDKPFGKLVL QASPQASGYR IQTLSLTTPE VSLQGNGIWQ QQNGQNQTEL TVSLNASQFN
YLSQQLGIDP GVNEAPLKVN AELAWQGAPY AFSLETLNGK MKFELGKGHL SQVSDKGARI
FSLFSLDSLV RKLSLDFSDV FGQGMYFNSF SGNLQIDNGV VKTTDTEMDA IAGNMKVRGY
TDLTSESLNY DIRFVPQLAS SVPTVVLIST SAWTLGLGAF ALTKVLEPVI EVISEIRFRV
TGTMSEPVVE ELERKSKEIE IPESILPMVG GELPAPTEGA EPKTDAAPVK NSDPIKTNAT
PHVEPEKNNE QPAPDADKPK VEPVKAVDED TSPQAPTLPK VEPAEPPKAE PEQPKPVSPK
VALSINTIQG DSHAHQPVAM SEQSRRQRES VVYRIAA
|
|---|
| |