| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0469 |
|---|
| Symbol | |
|---|
| ID | 4256685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 533715 |
|---|
| End bp | 535475 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638121083 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_736529 |
|---|
| Protein GI | 114045979 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCCA GATTAAAGAT GCGTTTGGGC GATCTGTTAG TTCAAGAATC GATTATTACC
GAAGAGCAGC TACAACAAGC CTTGGGCGAG CAGCGCAAGA CAGGGCATAA GCTCGGCCGC
ACCCTGATTG AGCTGCGCTC TATTACCGAA ACCCAACTGC TGCAATTTTT GTCGCAGCAG
CTCAATCTGC CGCTGCTGGA TATCAGCAAA CGCCCCATCC CCGCCGAAGT GGTGAGCCTT
ATCCCCGAGG TGCAAGCGCG GCGTTTTCGC GCCCTCGCGG TGGAAGATCG GGGGGATACG
GTATTAGTGG CCATGAGCGA CCCGGCGGAC TTGCAGGCGC TCGACCATTT AGAAATTTTA
ATCGCACCGA AAAAGCTCAG TGTTGCGGTG GCCCCCGAGC AGCAATTACT ACAAGCCTTC
GATAACCTGT ATCGTCGCAC CGACCAAATC GCGCAAATCG CCGGTAAGCT CGAAGAGGAA
TATGCCGCAG ATCAAATGTT TGATCTGGCG AGCCTGACCT CAAGCGATAG CGATAATGAA
ACCACAGTTG TTAAGCTGCT GCAGTCGATT TTTGAAGATG CGGTGCAAAT GCGTGCCTCG
GATATTCATA TTGAGCCTGG CGAAAAAGCC CTGCGGATCC GCCAACGTAT CGATGGCCAG
TTACACGAGA CCATTCTAAA TGAAGTGAAT ATCGCGGCGG CCTTAGTCTT GCGGCTTAAG
CTTATGGCTG GGCTAGATAT TTCTGAAAAA CGTCTGCCGC AAGACGGTCG TTTCCATATG
GAAATTAAGG GCCACAAGAT TGACGTGCGT ATGTCGACTA TGCCGATTTA CCACGGTGAA
TCTGTGGTGA TGCGTCTACT CGACCAATCC GCAGGCTTAT TGACCTTAAA TGAGACAGGG
ATGCCGCCGC ATATTTTGGC GCGTATCCGT AAGCAGATTA AACGTCCCCA CGGCATGTTG
CTGGTGACTG GGCCTACGGG TAGCGGTAAA ACCACCACCT TGTATGGCAT CCTAAGTGAG
CTCAATACTG CGGATCGCAA GATTATCACG GTAGAAGATC CGGTCGAATA CCAATTGCCA
AGGATCAACC AAGTTCAAGT TAACCATAAG ATTGGACTCG ATTTTTCGAA CGTGCTGCGC
ACTACTTTGC GTCAAGACCC GGACATTATC ATGGTCGGTG AGATGCGTGA CCAAGAAACG
GTGGAGATTG GTCTTAGGGG CGCACTTACG GGTCACTTTG TGTTGTCCAC ATTGCACACT
AACGATGCGG TGACCAGCGC GCTACGTTTG CTCGATATGG GCGCGGCCAG TTACCTAGTG
GCGAGTGCGC TAAGGGTGAT TATCGCCCAG CGCCTAGTGC GCCGCGTGTG CCATAACTGC
GGGGTGGAAT ATCAACCTAC GGCGCAGGAA AAAGCCTGGC TGAATAGTGT GAGTCGTCAG
GATTTTTCAT CGGCTAAGTT CCGCATTGGT ACTGGCTGCC AAAGCTGTAA CGGCAGTGGT
TATCGCGGCC GTATCGGTAT TTTTGAGATC CTTGAATTGG ATGAAAAGAT GATCGATGCG
ATGCGTACTG GTAATCCACA GGATTTTGCC CGTGCAGCCC TGCAAAGCCC TAACTTTACC
CCGCTCGCCG AGTCGGCACT GCAATATTTG AGCGAAGGCA TGACGACGAT TGAAGAGGTG
GCTAAGCTTG TTGAGGATGT GAGTGAGTCA CAGGTGCCAC TCTCGCGGGA TATTATCAGT
CAGCAAGGCG TTGAGGCGTA A
|
|---|
| Protein sequence | MKPRLKMRLG DLLVQESIIT EEQLQQALGE QRKTGHKLGR TLIELRSITE TQLLQFLSQQ
LNLPLLDISK RPIPAEVVSL IPEVQARRFR ALAVEDRGDT VLVAMSDPAD LQALDHLEIL
IAPKKLSVAV APEQQLLQAF DNLYRRTDQI AQIAGKLEEE YAADQMFDLA SLTSSDSDNE
TTVVKLLQSI FEDAVQMRAS DIHIEPGEKA LRIRQRIDGQ LHETILNEVN IAAALVLRLK
LMAGLDISEK RLPQDGRFHM EIKGHKIDVR MSTMPIYHGE SVVMRLLDQS AGLLTLNETG
MPPHILARIR KQIKRPHGML LVTGPTGSGK TTTLYGILSE LNTADRKIIT VEDPVEYQLP
RINQVQVNHK IGLDFSNVLR TTLRQDPDII MVGEMRDQET VEIGLRGALT GHFVLSTLHT
NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCHNC GVEYQPTAQE KAWLNSVSRQ
DFSSAKFRIG TGCQSCNGSG YRGRIGIFEI LELDEKMIDA MRTGNPQDFA RAALQSPNFT
PLAESALQYL SEGMTTIEEV AKLVEDVSES QVPLSRDIIS QQGVEA
|
|---|
| |