| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0461 |
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| Symbol | |
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| ID | 4256677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 525184 |
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| End bp | 527094 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638121075 |
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| Product | regulatory protein CsrD |
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| Protein accession | YP_736521 |
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| Protein GI | 114045971 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTCA CTCGAATGTT AACTACAAAA TTAACCAGTT TTTGGTTAAT GTCCTTGGCC
GCTATCGCCT TTGTCTTTTT ACTCAGCGCC ATGATGAGCT TTGTGCAGTT GACCTATAAG
TTTCAACAGC AAAAAGTGAC TGAGCTTGAA TCCCTGCTGA TTGAACATTA CCAAACTCAG
CCCGATTGGG AGTTAGAGTC TTGGTTGCCG CCTATGCTGC TGGCGTACAA CGCCGTCGAA
TTCCGTTTGA CCATGAAGAG CGAAGTGCTC TTCGCCTATC AGGGCAACGT GCAGACGCAA
AATGCCATGG TCTATACCCA TCTGCTCGAT CCCCAGTCGG GATTGAATAT GACCCTCACG
CTGCCACAGC CCTTCGAGCA TTACAGCGTC AGTTGGTATG AACTGCTTAT TTTAGGTGTG
GGCTTACTGG CGGTGATTGC GCTGGTGCGT TTTGGCCATG TGTGGTTTTC GCAGCAGCTA
GATGGTATTG AAGAGCTTGC TCAGCGTAGC CGATTGATTT TGCAAGGTAA ACACGAGCAA
GCACTCGCAA CGCCGGGCAA TGGTAAACCT AGGCTCATCA ACCGAGCCTT AACTAAGCTG
CTCGAAGAGT TGCAGGACGC CCATAAAGAG CGCGGCCGTT TCGATAAGTT TATTCGCTCC
AACACTTTTT TAGATGCGCA AACCCGTATC GGTAATCGGT TGTTTTTAAA CAACCGCCTC
GACGCCTTGA GTCATGACCA AGGCATGGTG GCCCACGGGG TGATTTATCT GTTGGAGATG
GATGACCTCG ATTTACTGCA ACAAGCCAAA GGGGAGAGCG CGGTTAAGGA GTTGCTCCAT
GCGACAGTTA ACAGCATTAA TTCTATTTTA CAGACCTTAC CCAACAGTAT CTTTGCACGC
CGCTCCCATA ATCAATTTGC GATTGTCGTA CCCCATGTGT CTTTGATTGA GGCCGATCAG
CTTGCCAGTA AATTACTGAA AGTCTGTTTG AGCCAACCCT TGCCCGACGA TGTGGAGAAT
CAAGACAACT TTTATCATTT AGGCTGTGCT TACTTTACCG CCGGGGATAA TGTTAATCAG
TTGCTCGATG AGGCCGATAT GGCATTACGC GCCGCGCAAT TACAAGGTAA CAGTAATTGG
TTTATGTACG ACAAGGGCGC GATTGATGAG GAGTTTGCCA AAGGCTCGGT GCGTTGGCGC
AGCTTCTTAG AGAATGCCTT GGTTCAGCGA CGTTTTTATC CCTTTAGTCA GCCAGTGATG
GATTCAGACG GCGTTGAGCA TCACAAAGAA ATTTTTACCC GGGCGCGGGA TAATCAGGGC
GCGTTAGTGC GGGCTACACT CTTCATCCCT ATGGCGAACA AATGCGGGTT GATGCCACAA
GTTGAGCGGC AGATGATTGA GCAAGTGTTA GGTTTGTTGT CGCAGGAAAA ACATAAAAAT
CAAGTCTATA GTGTGAACCT GAGCCTAGAT ACCTTAATGA GCCGCGCCTT TACTCAGTGG
CTTAAAACCA CTCTGCTCGA ATATCGCCAC CTGACGCCAC AACTGATTTT TGAGGTGTCC
GAGGATATCG TTATCCAACA CCAGGATAAG CTTAAGCCTA AGCTGGATAT GATCCGTAAG
ATGGGGGCGC GCCTGTGTGT TGACCATGTG GGTCAGCAGG TAGTGGGGAC TTACTATATT
CGAGAGTGCC ACTTCGACAT GATAAAACTG CATAGGTCGA TAGTGCGACA TATTCATTTA
CGCCCAGAAA ATCAATTATT TATTCGCAGT CTCATCGGTG GTTTATATCG CACCGAAGTG
CAAGTCTGTG CCGAGGGCAT TGAAGTATTT GAAGAATGGC AAACCCTACA AATCCTCGGC
GTGGGTATGG CGCAGGGCAC CTATTTTAGT GACCCCATTG AGGTGCAATA G
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| Protein sequence | MKFTRMLTTK LTSFWLMSLA AIAFVFLLSA MMSFVQLTYK FQQQKVTELE SLLIEHYQTQ
PDWELESWLP PMLLAYNAVE FRLTMKSEVL FAYQGNVQTQ NAMVYTHLLD PQSGLNMTLT
LPQPFEHYSV SWYELLILGV GLLAVIALVR FGHVWFSQQL DGIEELAQRS RLILQGKHEQ
ALATPGNGKP RLINRALTKL LEELQDAHKE RGRFDKFIRS NTFLDAQTRI GNRLFLNNRL
DALSHDQGMV AHGVIYLLEM DDLDLLQQAK GESAVKELLH ATVNSINSIL QTLPNSIFAR
RSHNQFAIVV PHVSLIEADQ LASKLLKVCL SQPLPDDVEN QDNFYHLGCA YFTAGDNVNQ
LLDEADMALR AAQLQGNSNW FMYDKGAIDE EFAKGSVRWR SFLENALVQR RFYPFSQPVM
DSDGVEHHKE IFTRARDNQG ALVRATLFIP MANKCGLMPQ VERQMIEQVL GLLSQEKHKN
QVYSVNLSLD TLMSRAFTQW LKTTLLEYRH LTPQLIFEVS EDIVIQHQDK LKPKLDMIRK
MGARLCVDHV GQQVVGTYYI RECHFDMIKL HRSIVRHIHL RPENQLFIRS LIGGLYRTEV
QVCAEGIEVF EEWQTLQILG VGMAQGTYFS DPIEVQ
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