Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0445 |
Symbol | |
ID | 4256573 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 507722 |
End bp | 508897 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638121059 |
Product | ornithine decarboxylase |
Protein accession | YP_736505 |
Protein GI | 114045955 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00713541 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCAAT TTCAATCTAT TGATGTTGCT GACTATTATG ATGCTCAAAC CTTCAAACGT ATTGAAGAGT TTGCCAAAGA TAAAGCGACC CCGTTCGTAG TGATTGATAC CAATATCATT GCGAAACAAT ACGATGACAT GGTTAATAGT TTTCCTTATG CCGATGTTTA TTATGCAGTT AAGGCAAACC CGGCGGCTGA GATCCTGACG TTACTGAAAA ACAAAGGGTC AAACTTCGAT ATTGCGTCGA TTTATGAATT AGATATGGTC ACTAACGTGG GCGTAACACC TGACCGCGTG AGCTATGGCA ACACCATCAA AAAGCGTCAA GATGTACGTG CGTTTTATGA GCGTGGTGTG CGTATGTATG CATCGGATTC TGAGGCCGAC TTACGTATGA TCGCCGAAGA AGCGCCGGGT TCACGTATCT ATGTGCGCAT CCTGACCGAA GGCACAGACA CCGCAGATTG GCCACTGTCT CGTAAGTTTG GTTGCCAAAA TGAGATGGCT TATGAGCTGT TAGTTCTGGC GAAGGAACTA GGTTTAGAGC CCTTTGGTAT TTCATTCCAC GTGGGGTCAC AGCAACGTGA TATCGGTGCT TGGGATTCGG CGATTGGTAA AGTGAAGAGC ATCTTCGATC GTCTGCGTGA TGAGCACAAC ATCGTCCTTA AGATGATCAA CATGGGTGGT GGCTTCCCAG CTAACTATAT CGACAAAACC AATCAACTTG GTGTGTATGC TGAGCAAATC ACCCACTTCC TGAAGGAAGA TTTTGGTGAT GATTTGCCAC AGATCATTCT GGAGCCGGGT CGCTCGCTGA TCTCTAACGC TGGGGTATTG GTGTCTGAGG TGGTGCTGAT CAGTAAGAAA TCCTACACCG CATTAGAGCG TTGGGTATTT ACCGATGTGG GTAAGTTCTC TGGTTTAATC GAAACCATGG ATGAGGCGAT TAAATTCCCA ATCTTCACCC ACAAACAAGG TGAGTTGGAT AAATGTGTTA TCGCCGGCCC AACCTGCGAT AGCGCCGACA TCATGTACGA ACACTACAGC TATGGTCTGC CGAATGACCT AGCGATTGGA GACCGTATGT ACTGGTTAAC AGCCGGTGCT TACACCACCA CTTATTCAGC GGTGTGCTTT AACGGTTTCC CACCACTGAA GGATTACTAC CTGTAA
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Protein sequence | MSQFQSIDVA DYYDAQTFKR IEEFAKDKAT PFVVIDTNII AKQYDDMVNS FPYADVYYAV KANPAAEILT LLKNKGSNFD IASIYELDMV TNVGVTPDRV SYGNTIKKRQ DVRAFYERGV RMYASDSEAD LRMIAEEAPG SRIYVRILTE GTDTADWPLS RKFGCQNEMA YELLVLAKEL GLEPFGISFH VGSQQRDIGA WDSAIGKVKS IFDRLRDEHN IVLKMINMGG GFPANYIDKT NQLGVYAEQI THFLKEDFGD DLPQIILEPG RSLISNAGVL VSEVVLISKK SYTALERWVF TDVGKFSGLI ETMDEAIKFP IFTHKQGELD KCVIAGPTCD SADIMYEHYS YGLPNDLAIG DRMYWLTAGA YTTTYSAVCF NGFPPLKDYY L
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