Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0443 |
Symbol | |
ID | 4256571 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 505821 |
End bp | 506657 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638121057 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_736503 |
Protein GI | 114045953 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0311128 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAACAC CTGGACTCGA TCAGGAATTG CAGCAACTCC AAGGCGTTTA CCAGCTGATC ACCGAGTTTT TAGTCAATTA TAGTTTCCAA TTAATCGGTG CGGCGCTGGT CTTTTTATTG GGTCTGTGGG TCGCCAGCAA AGTCTCGCGC TTAGTCGCCA AGCAGTGCGA AAAGCATCAC ATCGACATCA CCCTGAGTAA CTTTGTCAGC AATCTGATCC GTATCCTGAT CATTGTCATG GTGGGTATTA TTGCCCTTGG CAAGATAGGC ATTAGCGTCA CGCCCATGGT GGCAGCGATT GGTGCCGCCT CCCTCGGCGC GGGTTTAGCC CTACAGGGCA TGCTGTCGAA CTACGCCGCT GGGGTCACCA TTATTGTGAC TCGCCCTTTT GTGGTCGGAA ATACCATCGA AATCAAAGGT GAAAGCGGTG TCGTCACGCG GATTAATTTG GGAATGACGA TTTTAACCAA TGAGGAAGGC GAGCAAATTA GCATTCCCAA CAAGCACATC GTTGGTGAGA TCTTGCATAA CTCCTTCGGT AATAAGCTGG TCGAAACCCA ATTTAATCTG AGTTATAACA ACGACCCTGA GGCGGCGATA AGCCTAATCA CAGAGCTGCT GAGCCAAAAC CCCAATGTCA GTCAGGACAC TACACCAAAT ATTGGTATCA ATGGTTTTAA TGCCATCGGC CTCGAGATTG GTGTGCGTTA CTGGGTACCG ACACAAAGTT ACTTTCAGCA TAAATACAAG ATAAATATGG CCATTTATAA CGCCCTCAAA CAGGCAGGTA TCGAAATGGC TTGCCCAGTG CGAGAAATTC ATTTGCAAGA AAAGTAA
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Protein sequence | MITPGLDQEL QQLQGVYQLI TEFLVNYSFQ LIGAALVFLL GLWVASKVSR LVAKQCEKHH IDITLSNFVS NLIRILIIVM VGIIALGKIG ISVTPMVAAI GAASLGAGLA LQGMLSNYAA GVTIIVTRPF VVGNTIEIKG ESGVVTRINL GMTILTNEEG EQISIPNKHI VGEILHNSFG NKLVETQFNL SYNNDPEAAI SLITELLSQN PNVSQDTTPN IGINGFNAIG LEIGVRYWVP TQSYFQHKYK INMAIYNALK QAGIEMACPV REIHLQEK
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