Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0398 |
Symbol | |
ID | 4256490 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 456305 |
End bp | 457108 |
Gene Length | 804 bp |
Protein Length | 267 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638121012 |
Product | Sec-independent protein translocase TatD |
Protein accession | YP_736458 |
Protein GI | 114045908 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0084] Mg-dependent DNase |
TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCATCTT ATATAGATAT CGCTGTCAAC TTGCTTGGCA GCGCACTCGA ACCAGACATA GCGCAAATCG TACAAGCAGC GGCGGACCAA GGGGTTTCGC CGTTAATTGT TATTGGCAGC GATTTAACTG AAAGCGCCGC CGCCATTCAA TTATGCCAAC AGTATCCCAA ACAGCTTTAC TGCACCGCAG GCGTACATCC CCACCACGCT AGCGAATGGC AAGCAGACTC CAAACAGTTA CAAACAAACC TGTGCCAAGC GCCACAAGTC GTTGCTGTCG GTGAATGTGG ACTCGATTAC AACCGAGACT TCTCCCCTCG CCCAGCCCAG CGCCAAGCGT TTATCGACCA ACTCGAACTC GCAGTTGAAC TCAAAAAACC GGTACTCATG CATGAACGAG ATGCCCACGA TGATTTTTTG AGTATTGTTA AAGAATACCG CCCCCATCTC AGCGGAGCAT TACTGCACTG CTTTACTGGC ACCCGTGCTC AAATGGAAGC CTATATCGAC CTCGATCTAC ATTTGGGTAT TACGGGATGG GTATGTGATG AAAGGCGCGG CCAGGAGCTA GCCGAGCTGG TTCCATTTAT TCCAAAAGAA CGTTTATTGA TTGAAACTGA CAGCCCATAT CTGCTGCCAC GCAGTATGCG ACCTAAACCT AAATCCAGTA AAAACAAACC CGAATACTTG CCCTATATTG CACAATATAT TGCCAATTTA CGGGGTGAAA ATTCGGCTGA ATTTGCCAAA CAGTGCTATC AAAATAGCCT CGCCTTTTTT AATTTGAGTC AAGCTAATGA CTAA
|
Protein sequence | MPSYIDIAVN LLGSALEPDI AQIVQAAADQ GVSPLIVIGS DLTESAAAIQ LCQQYPKQLY CTAGVHPHHA SEWQADSKQL QTNLCQAPQV VAVGECGLDY NRDFSPRPAQ RQAFIDQLEL AVELKKPVLM HERDAHDDFL SIVKEYRPHL SGALLHCFTG TRAQMEAYID LDLHLGITGW VCDERRGQEL AELVPFIPKE RLLIETDSPY LLPRSMRPKP KSSKNKPEYL PYIAQYIANL RGENSAEFAK QCYQNSLAFF NLSQAND
|
| |