Gene Shewmr7_0382 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_0382 
Symbol 
ID4258587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp424572 
End bp425954 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content51% 
IMG OID638120987 
ProductUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 
Protein accessionYP_736442 
Protein GI114045892 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0770] UDP-N-acetylmuramyl pentapeptide synthase 
TIGRFAM ID[TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.169914 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCCAA TTTCCCTCGA GGCGCTGAGC CAACACTTAA GTGCGCATCG AGTCGGTGAC 
GATATCACCA TCCAAGCATT AAGCAGCGAT AGCCGTAAAA TCGGCCCTGC AACCCTGTTT
GTCGCCTTAA AGGGCGAGCG TTTCGATGGC CACGATTTTG CGGCCACGGC AATTGAAAAT
GGTGCGGTTG CACTGCTGGT TGAACGTGAA TTGGCCTTCG ATGTGCCGCA GCTTATTGTT
GCCGATTGCC AAAAAGCCAT GGGCGCGATT GGTGCCTATG TACGTGACCA AGTGGATCCC
ATTTGTGTGG CCTTAACTGG CTCCAATGGC AAAACCAGCG TGAAAGAAAT GATCGCCACA
ATTTTATCGG CGAAGCATCA AGTGCTTTAC ACCGCAGGTA ATTTTAATAA TGAAATCGGT
GTGCCACTCA CCTTGCTGCG CTTAACGCCC GAGGATAAAT ACGGGGTGTT TGAGCTTGGC
GCTAATCATA AAGGTGAGAT TGATTACACC TCGAGTTTGG TGCGTCCTCA CGTAGCGTTA
GTCAATAACG TTGGCAGCGC CCACTTAGAA GGCTTTGGTT CACAGGCGGG TGTCGCCCAG
GCCAAATCGG AAATCTACAA CCATCTGCAA TCCGGCGGCA CGGCAATTAT CAATGCTGAT
GATGCCTTTG CCGATGTGAT GCGGGTGAAA GCGAAACAAT ATAAGCAATT AAGCTTCTCC
CAGCAGGAAG GCGCGGCTAA ACGTCAAATC GATGTGATTG CGACTGGCCA CAAAGCCAAT
AGCGAAGGTT GCTATCGTTT TATCCTCAAT TACGCGGGAG AATCCTGCGA AGTGACTCTG
CCCCTCGCGG GTCGTCACCA AGTTAGCAAC GCGCTAGCTG CGGCAAGTGT TTGTATTGCT
TTGGGATTAA GCCTGAAGGA AATCGCCGAA GGCTTGAGCC AGTTGACCCC TGTCAAGGGG
CGTATGCAAC CCACTCAATT AGGACGCGTT CGCTTAATCG ATGATAGCTA TAACGCCAAT
CCCGTGTCAG TGGGGGCGGC TATCGCTTGG TTAAAGGAAA TTTCTGAAAA TCGCTGTTTG
GTACTGGGAG ATTTGGGCGA ATTAGGCGAC AATGCGCCCC TTTTACACGC TGAACTGGGA
CAACTGGCAA AGCAACAGGG CATCGATGCT CTGTTCTGTA CCGGCACCTT AACTCAGCAC
ACTAGCCAAG CTTTCGGGGC GGAGCACCAT GACAGCGTGG CGACGTTAGT AGAAAAACTC
ATAAAACACA TCAACCAGTT GCCGGGACAG GTGACGGTTT TAGTTAAAGG TTCACGTAGT
GCCGCAATGG AGCGGGTCGT GGATGGCCTA ACAGTAGCCT TCGGGCGTGG GGAGTTAGTG
TAG
 
Protein sequence
MIPISLEALS QHLSAHRVGD DITIQALSSD SRKIGPATLF VALKGERFDG HDFAATAIEN 
GAVALLVERE LAFDVPQLIV ADCQKAMGAI GAYVRDQVDP ICVALTGSNG KTSVKEMIAT
ILSAKHQVLY TAGNFNNEIG VPLTLLRLTP EDKYGVFELG ANHKGEIDYT SSLVRPHVAL
VNNVGSAHLE GFGSQAGVAQ AKSEIYNHLQ SGGTAIINAD DAFADVMRVK AKQYKQLSFS
QQEGAAKRQI DVIATGHKAN SEGCYRFILN YAGESCEVTL PLAGRHQVSN ALAAASVCIA
LGLSLKEIAE GLSQLTPVKG RMQPTQLGRV RLIDDSYNAN PVSVGAAIAW LKEISENRCL
VLGDLGELGD NAPLLHAELG QLAKQQGIDA LFCTGTLTQH TSQAFGAEHH DSVATLVEKL
IKHINQLPGQ VTVLVKGSRS AAMERVVDGL TVAFGRGELV