Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0254 |
Symbol | |
ID | 4256768 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 278398 |
End bp | 279081 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638120861 |
Product | phosphoglycolate phosphatase |
Protein accession | YP_736316 |
Protein GI | 114045766 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGGAAC AGATTAAAGC GATTGCCTTT GATCTCGACG GCACACTGAT TGACAGTGTG CCCGATCTTG CGGTCGCGAC CCAGGCGGCA CTCGCCGAAT TAGGTTTAGC AACGTGTACC GAGGCACAGG TGAGAACTTG GGTGGGCAAT GGGGCTGAGA TGCTGATGCG TCGCGCCATG AGCCACGCTT TAGGCACAGA CGTTGAGCAA ACGGCATTGG ATGCGGCTAT GCCCATCTTT ATGCATCACT ATCAAGAAAA TCTTGAGAAG CACAGTGCAC TCTATGCCGA TGTGCACCAA GTGCTGCAAA TCCTATTTGA TGCAGGATTT AAGCTGGCTG TGGTGACCAA CAAGCCCTAT CGCTTTACCT TGCCTTTGCT TGAAGCCTTT AAGATTAATG ACTTCTTTAG CTTAGTGCTT GGCGGCGATT CGTTGGCGAA GATGAAGCCC GATCCATTAC CGCTCGAGCA TCTATTAGCC GAATGGCAAC TCGATAAAAC TGAGTTGTTG ATGGTGGGCG ATTCTAAAAA TGACATTTTA GCGGCGAAAG CGGCGGGTGT TGCATCAATC GGCTTGACCT ATGGCTACAA CTACGGTGAA GATATTGGGC TCACTGGCCC TGACGCTGTA TGCGAGCAGT TTGCCGAGAT CCTGCGCTGG CTAAATCTCG CTCAGCCAGT TTAA
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Protein sequence | MREQIKAIAF DLDGTLIDSV PDLAVATQAA LAELGLATCT EAQVRTWVGN GAEMLMRRAM SHALGTDVEQ TALDAAMPIF MHHYQENLEK HSALYADVHQ VLQILFDAGF KLAVVTNKPY RFTLPLLEAF KINDFFSLVL GGDSLAKMKP DPLPLEHLLA EWQLDKTELL MVGDSKNDIL AAKAAGVASI GLTYGYNYGE DIGLTGPDAV CEQFAEILRW LNLAQPV
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