Gene Shewmr7_0253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_0253 
Symbol 
ID4256767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand+ 
Start bp277721 
End bp278398 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content49% 
IMG OID638120860 
Productribulose-5-phosphate 3-epimerase 
Protein accessionYP_736315 
Protein GI114045765 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCCAT TTTTAATTGC TCCATCGATT TTATCCGCCG ATTTCGCCCG TTTAGGGGAT 
GACGTTAAAG CCGTGTTAGA TGCAGGGGCT GACGTAGTGC ATTTTGATGT GATGGATAAC 
CACTATGTGC CCAACTTAAC CATTGGTCCT ATGGTGTGCA AAGCGTTACG TGACTATGGC 
ATCACGGCCG ATATCGATGT GCATTTAATG GTTAAGCCTG TTGATCGTAT CGTGCCTGAT 
TTTGCCAAGG CGGGTGCGTC TATTATTACT TTCCATCCCG AAGCCTCTGA GCATATCGAC 
CGCACCCTGC AACTGATTAA AGAATCGGGT TGTAAAGCGG GTTTAGTGTT TAACCCGGCA 
ACACCGCTGC ACTATCTCGA CCATGTAATG GATAAGTTGG ACGTGATTCT GCTGATGTCG 
GTCAACCCAG GTTTTGGCGG CCAATCCTTT ATTCCTTCGA CTTTAGATAA ACTACGCCAA 
GTGCGTGAGC GTATCGATGC CAGTGGTTTC GATATTCGCT TAGAAGTTGA TGGTGGCGTC 
AAAGTGGATA ACATTGCCGA AATCGCCGCC GCAGGTGCAG ATATGTTTGT CGCCGGCTCT 
GCCATTTTCG GTAAACCAGA CTATAAAGCC GTCGTCGACG AGATGCGCGC CGAGCTAGCG 
AAAGTTGAGG TCAAATAA
 
Protein sequence
MRPFLIAPSI LSADFARLGD DVKAVLDAGA DVVHFDVMDN HYVPNLTIGP MVCKALRDYG 
ITADIDVHLM VKPVDRIVPD FAKAGASIIT FHPEASEHID RTLQLIKESG CKAGLVFNPA 
TPLHYLDHVM DKLDVILLMS VNPGFGGQSF IPSTLDKLRQ VRERIDASGF DIRLEVDGGV 
KVDNIAEIAA AGADMFVAGS AIFGKPDYKA VVDEMRAELA KVEVK