| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0245 |
|---|
| Symbol | |
|---|
| ID | 4256075 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 270150 |
|---|
| End bp | 270665 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638120852 |
|---|
| Product | pilus assembly protein, PilQ |
|---|
| Protein accession | YP_736307 |
|---|
| Protein GI | 114045757 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3168] Tfp pilus assembly protein PilP |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.979467 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCT TACCTCTGTT AGCGTTAAGT CTTTTTTTAA TGGGTTGTGT TGGCGATCGT
AGTGATTTAG AGCTATTTGT TACTACTACC AAGGCACAGC ATGTGGCACA TATTCCACCC
TTAAAAGAAC CGCCAAAGTT TGAGCATTTT GCGTATCAAG CCGAATTAAT GCGTAGTCCC
TTTGTCCCTC CTTCAAGGGA GCTAACGGAA GAAGTGGTTG ATACCAGCAA AAACTGCTTA
CAGCCGGATT TGAAACGTCG TAAGGGCCGT TTAGAAACCT ATGCTTTAGA CAATCTTAAA
ATGCGCGGCA CCTTGAGCGA AGGTAATGTG ATTTGGGCAC TTATTGAAAC CAATGATGGC
AGTGTATATC GGATGGGCGT GGGTGAGTAT CTTGGGTTGT TTAATGGACA TATAGCGAAA
GTGACTTCTC AAAATGTGGA AGTTGTAGAA TTAATTCCCG ATGGTTCAGG TTGTTGGGCT
GAGCGCACAA ACAACATTGA ACTTTCTGGA AAATAA
|
|---|
| Protein sequence | MKLLPLLALS LFLMGCVGDR SDLELFVTTT KAQHVAHIPP LKEPPKFEHF AYQAELMRSP
FVPPSRELTE EVVDTSKNCL QPDLKRRKGR LETYALDNLK MRGTLSEGNV IWALIETNDG
SVYRMGVGEY LGLFNGHIAK VTSQNVEVVE LIPDGSGCWA ERTNNIELSG K
|
|---|
| |