Gene Shewmr7_0244 details

Gene Information

• Locus tag: Shewmr7_0244
• ID: 4256074
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella sp. MR-7
• Kingdom: Bacteria
• Replicon accession: NC_008322
• Strand: +
• Start bp: 269524
• End bp: 270150
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 638120851
• Product: pilus assembly protein, PilO
• Protein accession: YP_736306
• Protein GI: 114045756
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3167] Tfp pilus assembly protein PilO

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.966911
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAACTCG ATCTAAGTCA GTTTAATGAT ATCGATTTTG AGAATATCGG CGGTTGGCCA 
AATCAAGTCA AAGTTTTCTT CGCCGTTTTA TTAGCACTCT GCGTGTTTGC CGCGGGTTAT 
TTTTTGGTAG TTTCTGATGC CATCGATGTT TATAACGCTG AGCAAAGAAA GGAAGAGCAG 
CTAAGAGAAG ATTTTAAAAC CAAATACCAG CTGGCCGCGA ACCTTAAATT GTACCGTGAA 
CAGTTGGCTG TAATGGAGGA GCAATTTGCC GAGTTACTTA AAATGCTGCC CTCTGAAAAT 
GAAATGCCAG GGCTGCTCGA TGACTTAACC TTTGTGGCAA CCGACGCTGG ATTACGGATT 
AAGAGTTTAA ATTGGGAACC TGAAATTCAG CGGGATTTCT ACATTGAGTT TCCGATCAAA 
ATGTCTGTCA CGGGTGACTA TCATCAAATA GGCAATATGG TCAGTGGCGT GGCTAAGTTG 
CCTCGTATCG TCAGCTTGCA CGATTTCACC ATTAAGCGTG ACGAGAGCGG TAATCTAGCC 
ATGGATATTC TTGCTAAAAC CTATCGCTTT AAAGAGGGGG CTGAATTACC GCCCGAGAAG 
CCTGCTAATA ACAAGGGGAA GAAATAA 

 

Protein sequence

MKLDLSQFND IDFENIGGWP NQVKVFFAVL LALCVFAAGY FLVVSDAIDV YNAEQRKEEQ 
LREDFKTKYQ LAANLKLYRE QLAVMEEQFA ELLKMLPSEN EMPGLLDDLT FVATDAGLRI 
KSLNWEPEIQ RDFYIEFPIK MSVTGDYHQI GNMVSGVAKL PRIVSLHDFT IKRDESGNLA 
MDILAKTYRF KEGAELPPEK PANNKGKK