| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0229 |
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| Symbol | |
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| ID | 4256059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 244981 |
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| End bp | 246960 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638120833 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_736291 |
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| Protein GI | 114045741 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0413329 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00683756 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCCCAG AACTTGGACA CTTTTCGCTG ATTATAGGAG TGGCATTCGC CTTCTTATTA
ATCAGCGTTC CCCTTATAGG TGTTGCCCGT AAAGACCAAT ATCTAGTGAG GTATGCTTGG
CCGTTAACCT ACGGAATGTT CTTCTTTATC GCTTTATCCG TAGTATCTCT TGGTTACAGC
TTTGCCGTTG ATGACTTCTC CGTTGCCTAT GTGGCACATC ACTCGAATTC TCAGTTACCT
ATCTTCTTTA AGATTGCGGC CGTATGGGGC GGTCATGAAG GGTCGCTGCT GTTCTGGGTG
TTTGCACTAT CGACGTGGGC GGCTTCAGTT GCCTTATTCA GTAAAGGCTT AGAAGAAGTG
TTCACCGCTA GGGTACTGGC GGTACTGGCA TTGATCGTGA TTGGCTTTAG CTTATTTATG
CTGCTCACAT CTAGCCCATT TGAACGCCTA TTCCCAATGC CTGCCGAAGG TCGCGACTTA
AACCCAATGC TGCAGGACGT GGGGTTAATC TTCCATCCGC CAATGCTGTA CTTAGGTTAT
GTCGGTTTCT CGGTGAGCTT TGCCTTCGCG ATTGCCGCTC TCATGAGTGG TCACCTTGAC
TCTGCTTGGG CGCGTTGGTC ACGTCCTTGG ACCTTAGCTG CTTGGATTTT CCTCACGGGC
GGTATTGCTT TAGGTTCTTG GTGGGCATAC TACGAATTAG GCTGGGGTGG CTGGTGGTTC
TGGGATCCCG TTGAAAACGC CTCCTTTATG CCTTGGTTAG TGGGTACTGC ATTAGTGCAT
TCACTGATCG TGACCGAAAA ACGTGGTGCG TTCCGTAACT GGACCGTATT ACTGTCTATC
TTCGCTTTCT CATTAAGCTT ACTCGGTACC TTTATCGTAC GTTCGGGTGT ACTGACCTCT
GTGCACTCCT TCGCAGCCGA TCCTAGCCGC GGTATGTTTA TTCTGTTGCT GCTTGGTTTA
GCCATCGGCG GCTCGCTCAC GCTGTTTGCC TTCCGCGCCA GTGAAATGAG CAGCCCTGCA
CGTTTCGAAC TGAAATCAAA AGAAACCATG CTGTTAGTCT GTAACGTGTT ACTCACGGTT
GCAGCGGGTA CTGTGTTGTT AGGTACTTTA TACCCTCTGC TGATCGATGC ATTAGGCATG
GGTAAGATTT CTGTTGGGCC TCCATACTTC AACGCTGTGT TTGTGCCTAT CGTTCTCGTA
CTGTTTGGCT TTATGGGTGT CGGTCCAATC ATTCGTTGGA AGAAATCCAA AGCCGGTGAG
CTCAAGCGCC AATTATTGGT GCCAGCTTTA GTCTCGGCAG CGATTGGTAT CGTGACGCCG
TTTATTGTGG ATGGTGCGTT CAACGCTTGG GTTGCCTTTG GTATCGCCGC AGCCGCTTGG
ATTGTGCTAG CGACGGCAAG AGCCGCTTAC AATATTGTTA AGCCTAAAGA CGGTGAATTA
AGCATGGCGC GTATGGGGCG TAGCCAATTG GGTATGATTT TGGCCCACTT AGGTATTGCC
GTGTCAGTGA TCGGTGCCAC TATGGTGTCG AACTACTCAA TTGAGAAGAG TGTGCGTATG
GGGCCTGGCG TGAGCCAAGA GCTTGCGGGT TACACCTTCA AGTATCTCGA AACTAAGAAC
GTGGTTGGTC CTAACTACAC CGCGCAGCAA GGTCAAATTG AGATTTATAA AGGCGATAAA
TTGCTGACCT TACTCAAGCC CGATCGTCGC CAATACAATG TGCGTACCAT GGATATGACC
GAAGCCGGTA TCGATTGGGG TCTGTTCCGT GACTTATATG TCACCATGGG CGATCCAATC
AGCAGCACTG AATTTGCTGT GCGCTTGAAC TACAAACCTT TTGTTCGTTG GTTATGGTTT
GGAGCAATAT TCATGATGGT CGGTGGTTTC TTTGCCGCAT CGGATAAACG CTATCGCTCA
AAAGTGGCCG CTACGGTTAA GCCACAAGCT GAAAAAGCGA AATTAGCTAC CGCGCAATAA
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| Protein sequence | MIPELGHFSL IIGVAFAFLL ISVPLIGVAR KDQYLVRYAW PLTYGMFFFI ALSVVSLGYS
FAVDDFSVAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FALSTWAASV ALFSKGLEEV
FTARVLAVLA LIVIGFSLFM LLTSSPFERL FPMPAEGRDL NPMLQDVGLI FHPPMLYLGY
VGFSVSFAFA IAALMSGHLD SAWARWSRPW TLAAWIFLTG GIALGSWWAY YELGWGGWWF
WDPVENASFM PWLVGTALVH SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS
VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMSSPA RFELKSKETM LLVCNVLLTV
AAGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIVLV LFGFMGVGPI IRWKKSKAGE
LKRQLLVPAL VSAAIGIVTP FIVDGAFNAW VAFGIAAAAW IVLATARAAY NIVKPKDGEL
SMARMGRSQL GMILAHLGIA VSVIGATMVS NYSIEKSVRM GPGVSQELAG YTFKYLETKN
VVGPNYTAQQ GQIEIYKGDK LLTLLKPDRR QYNVRTMDMT EAGIDWGLFR DLYVTMGDPI
SSTEFAVRLN YKPFVRWLWF GAIFMMVGGF FAASDKRYRS KVAATVKPQA EKAKLATAQ
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