Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0225 |
Symbol | |
ID | 4255686 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 241271 |
End bp | 241957 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638120829 |
Product | heme exporter protein CcmB |
Protein accession | YP_736287 |
Protein GI | 114045737 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG2386] ABC-type transport system involved in cytochrome c biogenesis, permease component |
TIGRFAM ID | [TIGR01190] heme exporter protein CcmB |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.933912 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0051729 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAGAG GCATCAGCTT TACTACAGCG TTTTTCACGC TACTGCAGCG GGATCTAAAA ATCGCCATTC GTCATCGCGG AGATATCTTT AATCCCTTGT TATTCTTCAT CATGGTCGTG ACCTTATTTC CACTCGGTAT TGGCCCTGAA CCACAAATGT TGGCTCGCAT TGCCCCAGGG ATTATTTGGG TTGCTGCCCT ACTGGCATCG ATGTTGTCAC TCGAGCGCCT ATTTAAAGCC GACTTCAGTG ACGGTAGTTT AGAGCAAATG CTGCTCAGCC CACAGCCACT CTCGGTATTA GTATTGGCCA AAGTGCTAGC CCATTGGCTA CTGACTGGCG TGCCATTAAT TATTATCGCG CCCCTGCTCG CGGTGTTACT CAACCTAGAA GCCAACAGCT ATGGCGCACT GATCGCGACT CTGGCGTTAG GAACACCGGT ATTGTCGCTC CTCGGCGCCA TTGGTGTGGC TTTAACCGTT GGTTTACGTA AAGGCGGCGT GTTACTGAGT TTACTGATCC TACCGCTTTA TATTCCTGTG CTGATTTTCG CGACCAGCGC CATAGATGCG GCAGGAATGA ATTTACCCTA TGATGGTCAG CTCGCTATAA TTGGCGCCAT GTTGATCGGT TCGTTAACCT TAGCACCCTT TGCTATTGGT GCATCTCTGC GAGTGAGTAC TAACTAA
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Protein sequence | MKRGISFTTA FFTLLQRDLK IAIRHRGDIF NPLLFFIMVV TLFPLGIGPE PQMLARIAPG IIWVAALLAS MLSLERLFKA DFSDGSLEQM LLSPQPLSVL VLAKVLAHWL LTGVPLIIIA PLLAVLLNLE ANSYGALIAT LALGTPVLSL LGAIGVALTV GLRKGGVLLS LLILPLYIPV LIFATSAIDA AGMNLPYDGQ LAIIGAMLIG SLTLAPFAIG ASLRVSTN
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