| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0219 |
|---|
| Symbol | |
|---|
| ID | 4255681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 237234 |
|---|
| End bp | 238223 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638120824 |
|---|
| Product | DNA-directed RNA polymerase subunit alpha |
|---|
| Protein accession | YP_736282 |
|---|
| Protein GI | 114045732 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
|---|
| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0858002 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0062609 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGGTT CTGTTACAGA ATTTCTTAAA CCGCGTCTCG TTGATATCGA GCAGGTTAAC
TCAACACGTG CCAAGGTTAC TTTGGAACCG CTTGAGCGTG GTTTCGGCCA CACTTTAGGT
AACGCGTTGC GTCGCATCCT ATTGTCGTCT ATGCCCGGCT GCGCGGTTAC CGAAGTCGAG
ATTGACGGCG TACTGCACGA ATACAGCAGT AAGGAAGGCG TACAAGAAGA TATCCTTGAA
ATCTTGCTGA ACCTGAAAGG GTTAGCAGTG ACTATCGAGG GTAAAGACGA GGCTATGCTT
ACATTAAGCA AGTCCGGCGC AGGCCCTGTC ATCGCAGCAG ATATCACGCA TGATGGTGAT
GTCACTATCG TGAATCCTGA TCATGTTATC TGTCATTTAA CAGGTAACAA TGATATCAGC
ATGCGTATTC GCGTTGAGCG TGGTCGTGGT TATGTGCCAG CATCTGCTCG TGCACAGACT
GAAGACGATG ATCGCCCAAT CGGCCGCTTG CTGGTTGATG CTTCTTTCTC GCCAGTTGCA
CGTATTGCCT ACAATGTAGA AGCAGCCCGT GTGGAACAGC GTACTGACTT GGATAAACTC
GTTATCGATA TGACCACTAA CGGTACTATC GATCCTGAGG AAGCTATCCG TCGTTCTGCA
ACCATCTTAG CTGAACAGCT GGATGCGTTC GTTGAGCTGC GCGACGTGAC TGAGCCAGAA
ATGAAAGAAG AGAAGCCGGA GTTCGATCCG ATTCTGTTGC GTCCTGTCGA CGATTTAGAG
CTAACTGTAC GTTCGGCTAA CTGCTTGAAA GCCGAAGCGA TTCATTACAT CGGAGATCTG
GTACAGCGTA CTGAAGTTGA GCTGCTGAAG ACCCCTAACT TAGGTAAGAA ATCTCTTACT
GAAATTAAGG ACGTTTTAGC GTCTCGCGGA CTGTCGTTAG GTATGCGTCT GGAAAACTGG
CCTCCAGCTA GTTTAGCAGA CGACCTATAA
|
|---|
| Protein sequence | MQGSVTEFLK PRLVDIEQVN STRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE
IDGVLHEYSS KEGVQEDILE ILLNLKGLAV TIEGKDEAML TLSKSGAGPV IAADITHDGD
VTIVNPDHVI CHLTGNNDIS MRIRVERGRG YVPASARAQT EDDDRPIGRL LVDASFSPVA
RIAYNVEAAR VEQRTDLDKL VIDMTTNGTI DPEEAIRRSA TILAEQLDAF VELRDVTEPE
MKEEKPEFDP ILLRPVDDLE LTVRSANCLK AEAIHYIGDL VQRTEVELLK TPNLGKKSLT
EIKDVLASRG LSLGMRLENW PPASLADDL
|
|---|
| |