Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0218 |
Symbol | rpsD |
ID | 4255680 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 236589 |
End bp | 237209 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638120823 |
Product | 30S ribosomal protein S4 |
Protein accession | YP_736281 |
Protein GI | 114045731 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0522] Ribosomal protein S4 and related proteins |
TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000114073 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00573009 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCAAGAT ACTTGGGTCC CAAGCTCAAG CTCAGCCGCC GAGAAGGTAC TGACCTTTTC TTAAAAAGCG GTGTGAGAGC AATCGATTCA AAGTGTAAAC TGGAATCAGC ACCTGGACAG CATGGCGCTC GTAAGCCACG TCTGTCAGAG TACGGTTTAC AGTTACGCGA AAAACAAAAA GTTCGTCGTA TTTACGGTGT GTTAGAAAAA CAATTCCGTA ACTACTATAA AGAGGCTGCA CGTCTGAAAG GCAACACTGG TGAGAACCTG TTGCAACTTT TAGAAACTCG TTTAGATAAC GTTGTTTATC GTATGGGTTT CGGTGCGACT CGTGCAGAAT CACGTCAGCT AGTGAGCCAT AAATCTGTTA TGGTTAACGG TCGTGTTGTT AACATTCCGT CATTCAAAGT GTCTGCGAAT GATGTTGTAA GCATCCGTGA AAAGTCACGC ACTCAAGCTC GTATCAAAGC GGCTTTAGAA GTGGCTGCTC AACGCGAGAA GCCTACATGG GTTGAAGTCG ACAGCGCGAA AATGGAAGGT GCTTTCAAGC GTATTCCAGA ACGTAGCGAT TTGTCTGCGG AAATTAACGA ACAGCTGATC GTCGAGCTTT ACTCTAAGTA A
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Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLESAPGQ HGARKPRLSE YGLQLREKQK VRRIYGVLEK QFRNYYKEAA RLKGNTGENL LQLLETRLDN VVYRMGFGAT RAESRQLVSH KSVMVNGRVV NIPSFKVSAN DVVSIREKSR TQARIKAALE VAAQREKPTW VEVDSAKMEG AFKRIPERSD LSAEINEQLI VELYSK
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