| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0195 |
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| Symbol | rplD |
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| ID | 4255323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 226037 |
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| End bp | 226642 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638120800 |
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| Product | 50S ribosomal protein L4 |
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| Protein accession | YP_736258 |
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| Protein GI | 114045708 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0088] Ribosomal protein L4 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00202265 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000317476 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGGAATTGG TATTGAAAGA CGCGCAAAGC GCTCTTGAAG TTTCCGAAAC TACCTTCGGC
CGTGACTTTA ACGAGGCACT GGTTCATCAG GTAGTAGTAG CATACGCTGC AAACGCACGT
CAGGGCACTC GTGCTCAAAA GACTCGTGCG GAAGTAACTG GCTCTGGCAA AAAGCCATGG
CGCCAAAAAG GCACTGGCCG CGCTCGTGCG GGTGGTGTTA AGGGCCCAAT CTGGCGTGGC
GGTGGCGTAA CATTCGCTGC TAAAACTCAA GATCACAGCC AAAAAGTTAA CAAGAAGATG
TACCGCGGCG CGCTGAAAAG CATTCTGTCT GAGCTGGTAC GTCAAGATCG TCTGGTTGTT
GTTGAATCAT TCAGCGTTGA AGCTCCTAAA ACTAAAGAGC TGAAAGCTAA ACTGAAAGCA
ATGAACTTAG AAGACGTGTT AATTGTGACT GCAGAAGTTG ACGAGAATTT ATTCTTAGCA
GCTCGCAACC TGTACAAGGT TGACGTTCGT GACGTTGCAG GTCTAGACCC AGTAAGTCTG
ATCGCGTTCA ACACAGTGCT TGTGACTGCT GATGCAGTTA AGCAAATCGA GGAGATGCTA
GCATGA
|
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| Protein sequence | MELVLKDAQS ALEVSETTFG RDFNEALVHQ VVVAYAANAR QGTRAQKTRA EVTGSGKKPW
RQKGTGRARA GGVKGPIWRG GGVTFAAKTQ DHSQKVNKKM YRGALKSILS ELVRQDRLVV
VESFSVEAPK TKELKAKLKA MNLEDVLIVT AEVDENLFLA ARNLYKVDVR DVAGLDPVSL
IAFNTVLVTA DAVKQIEEML A
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