| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0177 |
|---|
| Symbol | |
|---|
| ID | 4257370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 204114 |
|---|
| End bp | 205073 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638120778 |
|---|
| Product | biotin--protein ligase |
|---|
| Protein accession | YP_736240 |
|---|
| Protein GI | 114045690 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0340] Biotin-(acetyl-CoA carboxylase) ligase |
|---|
| TIGRFAM ID | [TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region
[TIGR00122] BirA biotin operon repressor domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0131379 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0107257 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGATA ACTGGGTGAG AAAACGCGAA ATACTGGGAT TACTGTCGAG CGAATATTTT
GTCTCGGGTG AAGAGTTGGC GACACAACTG GGTATTTCTC GTGCGGCGGT GAGTAAGCAT
GTGGATGCTT TGGAAGACTA TGGCGTGGCA ATTTACAGTG TCAAAGGCCG CGGTTACAAG
TTAGCGAACC CTATCTCCCT TATCGACTCG GCTCGGTTAA TTCAGTCGAT TGATAATCGC
TGCTTTTATT TTGATGAGAT CCCAAGCACC AACGGCTTTA TGTTAAGCCA TACGGGTGAG
CTTAAGAGTG GCGACCTGTG TGTCGCGGAA TACCAGTCGG CAGGGCGAGG TCGCCGTGGC
CGTACTTGGG GTTCTCCCTA TGGGCATCAT TTATATTTCT CGCAGTTTTG GTCATTTCCT
CAAGGGATGG CGCAGGCTAT GGGCTTAAGC CTAGTGGTAG CTTGTAGCTT AGTCGAGGTA
TTGAAATCCT TTGGCGTTGA TAATATCGGC GTAAAATGGC CAAACGATAT TTACCTTAAT
TATAAAAAGC TTGCTGGCAT TTTAATTGAG ATGTCAGGTC AGGCGGACAG TGAGTGCCAA
TTGATCATTG GTATTGGCGT CAACATGGCC ATGTCGGAAG ACCAAGGTAA GGGCATAGAC
CAGCCTTGGA GCGATTTATC CGCTCTCGCG ACTATGCCGA ATAAAACGGA TCTCGTGATT
GCGCTGCAAA AACAGCTGAA GAAAGATATT CAACTGTTTG AACGCGAAGG ATTAGCTGCA
TTCAAATTGC GTTGGCAAGG CGCTGATTTG TTCTATGGCA AAGAGATCCG TTTGCTCATG
GGTGAAAATC ATGTTGAGGG AATTTGCCGC GGCGTCGACG AGCAGGGCGC AGTGCTACTT
GAAACCGCCG ATGGCACACA GGCATACATC GGCGGCGAAA TTAGTTTAAG GCCGAGATAG
|
|---|
| Protein sequence | MSDNWVRKRE ILGLLSSEYF VSGEELATQL GISRAAVSKH VDALEDYGVA IYSVKGRGYK
LANPISLIDS ARLIQSIDNR CFYFDEIPST NGFMLSHTGE LKSGDLCVAE YQSAGRGRRG
RTWGSPYGHH LYFSQFWSFP QGMAQAMGLS LVVACSLVEV LKSFGVDNIG VKWPNDIYLN
YKKLAGILIE MSGQADSECQ LIIGIGVNMA MSEDQGKGID QPWSDLSALA TMPNKTDLVI
ALQKQLKKDI QLFEREGLAA FKLRWQGADL FYGKEIRLLM GENHVEGICR GVDEQGAVLL
ETADGTQAYI GGEISLRPR
|
|---|
| |