Gene Shewmr7_0175 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_0175 
Symbol 
ID4257563 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp196360 
End bp196824 
Gene Length465 bp 
Protein Length154 aa 
Translation table11 
GC content44% 
IMG OID638120771 
ProductRNP-1 like RNA-binding protein 
Protein accessionYP_736238 
Protein GI114045688 
COG category[R] General function prediction only 
COG ID[COG0724] RNA-binding proteins (RRM domain) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000046912 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00946838 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAAAAGT CATTTCTTAT TGTTTTGGTT ATTGCCATTC TCGGCGCAAT CGCGCTATCT 
CAATTTGCAA CTACATTACC TGCGTACATC GCTTTTGTTG CTGGCGTTAT CATTACTACT
CTCGTTTTTA AATTTGTCCC AGAGACAAAC CAAGCTCAAG GTTCCGATGA GCAATATGTA
GGCCCAACTA TGACACTCTA TGTAGGCAAC TTGCCTTATC GTGTCCATGA GGGTGAAGTA
AAGGTTCTGT TTGGTGAGTT TGGTCCCGTG AACTCGGTAC GTTTAGTACG TGATCGCAAG
ACCGGTCGTC GTAAAGGTTT CGGCTTTGTG GAAATGTCTG AGGCGGGTGC TCAAAAAGCA
ATGGTTAAGT TGAACGACTT TAACTTCCAA GAAAGAACAT TAAAGGTTAG AGAAGCGAAG
ACTCAAGATT CGGAAGCTGC CGACCGTACA GGTACCGATG AATAA
 
Protein sequence
MQKSFLIVLV IAILGAIALS QFATTLPAYI AFVAGVIITT LVFKFVPETN QAQGSDEQYV 
GPTMTLYVGN LPYRVHEGEV KVLFGEFGPV NSVRLVRDRK TGRRKGFGFV EMSEAGAQKA
MVKLNDFNFQ ERTLKVREAK TQDSEAADRT GTDE