| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0162 |
|---|
| Symbol | |
|---|
| ID | 4257550 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 183873 |
|---|
| End bp | 184535 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638120758 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_736225 |
|---|
| Protein GI | 114045675 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGACT GGAAGAAGAT TGATACTGTA CTGCTCGATA TGGATGGCAC CCTGCTCGAC
CTGCACTTTG ATAACCATTT TTGGTTGAGC CTGGTGCCAC AGGAGCTGAG CAAGCAGCGG
GGATTAAGCC AGAGTCAGGC ACAACAACTG GTGGAGGAAG CCTACGGCAG AGTCGCGGGC
ACGTTAGACT GGTATTGCCT CGATTATTGG CAGTCCGAGC TGCAGCTCGA CATTATGGGG
CTTCACCGCA ACTTAGTTGA CCGTATTCAG CTACGCCAAG ATAGTATGCC TTTTCTCGAT
GCCCTCGCCG CCGCAGGGAA AAAACGTATC TTAGTCACCA ATGCCCACCC TAAGAGTCTT
GCGCTTAAGC TGGAGCACAC TGAACTGGCG AGCGGCTTAG ATGCGATGAT TTCAAGTCAT
GAAACGGGTT ATCCCAAGGA ACACCCACAA TTTTGGCAAA CGCTATTTGA AAAATTCGCC
CTAGTGCCAG AGCGCTGCCT GTTTATCGAT GATAGCGAGC CTATTTTGAA TGCGGCGCGC
TTAGCGGGCG TGGGGCATCA GCTCGGGATC AGCAATCCCG ATAGCCAAAA GCCTGCCAAG
GCCTTCCATG ATTTTCCGGC CATTAGCGAC TATCGCCTGC TGTTTGCCGA TCTGGCGGGT
TAA
|
|---|
| Protein sequence | MFDWKKIDTV LLDMDGTLLD LHFDNHFWLS LVPQELSKQR GLSQSQAQQL VEEAYGRVAG
TLDWYCLDYW QSELQLDIMG LHRNLVDRIQ LRQDSMPFLD ALAAAGKKRI LVTNAHPKSL
ALKLEHTELA SGLDAMISSH ETGYPKEHPQ FWQTLFEKFA LVPERCLFID DSEPILNAAR
LAGVGHQLGI SNPDSQKPAK AFHDFPAISD YRLLFADLAG
|
|---|
| |