Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0056 |
Symbol | |
ID | 4256590 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 67405 |
End bp | 68649 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638120651 |
Product | major facilitator transporter |
Protein accession | YP_736119 |
Protein GI | 114045569 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00890] Oxalate/Formate Antiporter |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00977888 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000481777 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACTAAAG AGATGAACCG TACTCGGTAC CTGACCTTAG TTGGTACTAT TATCACCCAG TTTGCACTCG GCTCTGTTTA CACTTGGAGC CTATTCAATG CGCAATTGGC CGCAAAGCTC GATGAACCCG TTAGCCAAGT GGCATTTGTG TTTGGTTTAC TGAGTTTGTC TTTGGCCGTG GCTTCTTCCA TGGCGGGTAA ATTACAGGAA CGCTTCGGCG TGCGTAATGT CACCTTAGGT GCAGGTGTGT TACTCGGGTT GGGATTCTTA CTCACAGCCC AAGCCAGTAA CTTGATGATG CTTTACCTGT GTGCCGGGAT TTTAGTGGGC TTTGCCGATG GCACTGGCTA CTTGATGACC TTGTCTAACT GCGTGAAGTG GTTCCCCGAA CGCAAAGGGC TGATTTCGGC ATTAGCGATT GGTGCTTATG GTCTAGGTAG TCTCGGATTC AAGTACATCA ACATGTTGTT ACTCGAAAAC ACAGGCCTTG AAACTACCTT CCAACTGTGG GGCTTAATCG CCATGGCGCT AGTTTTGTGT GGCGGCATGT TGATGAAAGA TGCGCCAGCA CAATCAGCCG CAAGTCAGCA AGCCGAAAGC CGCGACTTCA CCCTCGCAGA AGCCATGCGT AAGCCACAAT ACTGGATGTT GGCGCTGATG TTCCTATCGG CCTGTATGAG TGGTTTATAT GTGATTGGTG TGGCGAAAGA TATCGGCGAG AAGATGGTCG ACTTGCCCGT ACTAGTCGCC GCCAATGCGG TTGCTGTCAT TGCGATGGCG AACCTCTGTG GTCGTTTGGT GCTGGGTATT CTGTCGGACA AAATCCCTCG TATTCGGGTC ATTTCGCTGG CGCAGATCAT CACCTTAGTC GGTATGGTGT TACTGTTATT CATCCCTTTG AATGCTAACT TGTTCTTCGT CGCGGTCGCC TGCGTTGCTT TTAGTTTTGG CGGCACTATC ACTGTCTATC CCTCATTGGT GAGTGACTTC TTCGGCCTGA ATAACCTGAC TAAAAATTAT GGGGTTATCT ACTTAGGTTT TGGTATCGGC AGCATTATCG GTTCGATTGT CGCCTCGTTA TTCGGTGGCT TTATCGCGAC CTTCAACGTG ATTCTAGTGC TGCTGGTGGT GGCGTTAGTG ATGTCATTAA CCATACGTTT GCCAGAACCT AAAACTCCAG CATCAGCCAA GAAAGCGACC AAGGGCACAA CCCGCTTAGT AAACATGACA GCAGAATCGG CGTAA
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Protein sequence | MTKEMNRTRY LTLVGTIITQ FALGSVYTWS LFNAQLAAKL DEPVSQVAFV FGLLSLSLAV ASSMAGKLQE RFGVRNVTLG AGVLLGLGFL LTAQASNLMM LYLCAGILVG FADGTGYLMT LSNCVKWFPE RKGLISALAI GAYGLGSLGF KYINMLLLEN TGLETTFQLW GLIAMALVLC GGMLMKDAPA QSAASQQAES RDFTLAEAMR KPQYWMLALM FLSACMSGLY VIGVAKDIGE KMVDLPVLVA ANAVAVIAMA NLCGRLVLGI LSDKIPRIRV ISLAQIITLV GMVLLLFIPL NANLFFVAVA CVAFSFGGTI TVYPSLVSDF FGLNNLTKNY GVIYLGFGIG SIIGSIVASL FGGFIATFNV ILVLLVVALV MSLTIRLPEP KTPASAKKAT KGTTRLVNMT AESA
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