Gene Shewmr7_0056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_0056 
Symbol 
ID4256590 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp67405 
End bp68649 
Gene Length1245 bp 
Protein Length414 aa 
Translation table11 
GC content49% 
IMG OID638120651 
Productmajor facilitator transporter 
Protein accessionYP_736119 
Protein GI114045569 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00890] Oxalate/Formate Antiporter 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00977888 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000481777 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTAAAG AGATGAACCG TACTCGGTAC CTGACCTTAG TTGGTACTAT TATCACCCAG 
TTTGCACTCG GCTCTGTTTA CACTTGGAGC CTATTCAATG CGCAATTGGC CGCAAAGCTC
GATGAACCCG TTAGCCAAGT GGCATTTGTG TTTGGTTTAC TGAGTTTGTC TTTGGCCGTG
GCTTCTTCCA TGGCGGGTAA ATTACAGGAA CGCTTCGGCG TGCGTAATGT CACCTTAGGT
GCAGGTGTGT TACTCGGGTT GGGATTCTTA CTCACAGCCC AAGCCAGTAA CTTGATGATG
CTTTACCTGT GTGCCGGGAT TTTAGTGGGC TTTGCCGATG GCACTGGCTA CTTGATGACC
TTGTCTAACT GCGTGAAGTG GTTCCCCGAA CGCAAAGGGC TGATTTCGGC ATTAGCGATT
GGTGCTTATG GTCTAGGTAG TCTCGGATTC AAGTACATCA ACATGTTGTT ACTCGAAAAC
ACAGGCCTTG AAACTACCTT CCAACTGTGG GGCTTAATCG CCATGGCGCT AGTTTTGTGT
GGCGGCATGT TGATGAAAGA TGCGCCAGCA CAATCAGCCG CAAGTCAGCA AGCCGAAAGC
CGCGACTTCA CCCTCGCAGA AGCCATGCGT AAGCCACAAT ACTGGATGTT GGCGCTGATG
TTCCTATCGG CCTGTATGAG TGGTTTATAT GTGATTGGTG TGGCGAAAGA TATCGGCGAG
AAGATGGTCG ACTTGCCCGT ACTAGTCGCC GCCAATGCGG TTGCTGTCAT TGCGATGGCG
AACCTCTGTG GTCGTTTGGT GCTGGGTATT CTGTCGGACA AAATCCCTCG TATTCGGGTC
ATTTCGCTGG CGCAGATCAT CACCTTAGTC GGTATGGTGT TACTGTTATT CATCCCTTTG
AATGCTAACT TGTTCTTCGT CGCGGTCGCC TGCGTTGCTT TTAGTTTTGG CGGCACTATC
ACTGTCTATC CCTCATTGGT GAGTGACTTC TTCGGCCTGA ATAACCTGAC TAAAAATTAT
GGGGTTATCT ACTTAGGTTT TGGTATCGGC AGCATTATCG GTTCGATTGT CGCCTCGTTA
TTCGGTGGCT TTATCGCGAC CTTCAACGTG ATTCTAGTGC TGCTGGTGGT GGCGTTAGTG
ATGTCATTAA CCATACGTTT GCCAGAACCT AAAACTCCAG CATCAGCCAA GAAAGCGACC
AAGGGCACAA CCCGCTTAGT AAACATGACA GCAGAATCGG CGTAA
 
Protein sequence
MTKEMNRTRY LTLVGTIITQ FALGSVYTWS LFNAQLAAKL DEPVSQVAFV FGLLSLSLAV 
ASSMAGKLQE RFGVRNVTLG AGVLLGLGFL LTAQASNLMM LYLCAGILVG FADGTGYLMT
LSNCVKWFPE RKGLISALAI GAYGLGSLGF KYINMLLLEN TGLETTFQLW GLIAMALVLC
GGMLMKDAPA QSAASQQAES RDFTLAEAMR KPQYWMLALM FLSACMSGLY VIGVAKDIGE
KMVDLPVLVA ANAVAVIAMA NLCGRLVLGI LSDKIPRIRV ISLAQIITLV GMVLLLFIPL
NANLFFVAVA CVAFSFGGTI TVYPSLVSDF FGLNNLTKNY GVIYLGFGIG SIIGSIVASL
FGGFIATFNV ILVLLVVALV MSLTIRLPEP KTPASAKKAT KGTTRLVNMT AESA