| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0015 |
|---|
| Symbol | fadA |
|---|
| ID | 4258048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 18689 |
|---|
| End bp | 19852 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638120606 |
|---|
| Product | 3-ketoacyl-CoA thiolase |
|---|
| Protein accession | YP_736078 |
|---|
| Protein GI | 114045528 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02445] fatty oxidation complex, beta subunit FadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0665218 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAG CTGTTATCGT AGATTGCATT CGTACTCCTA TGGGCCGTTC TAAGGCTGGG
GTGTTCCGTA ATGTACGTGC AGAAACACTC TCTGCCGAAT TAATGAAAGG TCTATTACTG
CGTAACCCGC AATTAGATCC CAATGCTATT GAAGACGTGA TTTGGGGCTG CGTGCAGCAA
ACCCTAGAGC AAGGCTTCAA CATTGCCCGT AATGCATCAT TGCTGGCTGG TATTCCAAAG
ACGGCTGGCG CAGTGACAGT CAACCGCCTA TGCGGTTCTT CAATGGAAGC CATCCACCAA
GCCGCACGCG CAATCATGAC TGGCATGGGC GATACCTTTA TTATTGGTGG TGTTGAACAT
ATGGGCCACG TGCCAATGAA CCATGGTGTT GACTTCCACC CAGGTTTGGC CAATAACGTC
GCCAAAGCGT CTGGCATGAT GGGCTTAACC GCTGAGATGT TGGGTAAGCT TCACGGCATC
AGCCGTGAGC AGCAAGATGC CTTTGCAGTG CGTTCACACC AACGCGCTCA CGCTGCCACA
GTTGAAGGCC GCTTTGCCAA GGAAATCTAT GCCATCGAAG GCCATGATGC TAACGGCGCG
CTGATTAAAG TGCTGCACGA CGAAGTGATT CGTCCAGAAA CCTCAATGGA ATCATTAGCG
GCGCTGCGCC CAGTATTCGA CCCAGCAAAC GGTACAGTGA CTGCCGGTAC CTCTTCAGCA
TTATCTGACG GCGCTTCGGC TATGTTAGTC ATGGAAGAGT CTAAAGCACG CGCTTTAGGT
CTACCAATCC GTGCCCGTAT CCGCTCAATG GCGGTTGCAG GTTGTGACGC GGCAATCATG
GGTTACGGTC CAGTACCTGC TACGCAAAAA GCTCTGGCTC GCGCAGGCAT CACAGTTAAT
GATTTGGATG TTATCGAACT GAACGAAGCC TTTGCCGCGC AATCTTTACC CTGCGTGAAA
GATTTAGGCC TGTTGGATGT GGTCGATGAG AAGATTAACC TCAACGGTGG TGCTATCGCA
CTTGGCCATC CACTGGGTTG CTCTGGTGCG CGTATTTCGA CGACGCTGAT CAACCTGATG
GAGCACAAAG ATGCGACCTT AGGTTTAGCC ACTATGTGTA TCGGTTTAGG CCAAGGTATT
GCGACCGTTT TCGAACGCGT TTAA
|
|---|
| Protein sequence | MKQAVIVDCI RTPMGRSKAG VFRNVRAETL SAELMKGLLL RNPQLDPNAI EDVIWGCVQQ
TLEQGFNIAR NASLLAGIPK TAGAVTVNRL CGSSMEAIHQ AARAIMTGMG DTFIIGGVEH
MGHVPMNHGV DFHPGLANNV AKASGMMGLT AEMLGKLHGI SREQQDAFAV RSHQRAHAAT
VEGRFAKEIY AIEGHDANGA LIKVLHDEVI RPETSMESLA ALRPVFDPAN GTVTAGTSSA
LSDGASAMLV MEESKARALG LPIRARIRSM AVAGCDAAIM GYGPVPATQK ALARAGITVN
DLDVIELNEA FAAQSLPCVK DLGLLDVVDE KINLNGGAIA LGHPLGCSGA RISTTLINLM
EHKDATLGLA TMCIGLGQGI ATVFERV
|
|---|
| |