| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0014 |
|---|
| Symbol | |
|---|
| ID | 4258047 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 17262 |
|---|
| End bp | 18455 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638120605 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_736077 |
|---|
| Protein GI | 114045527 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0629316 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCAAA CGGAGCAAAC GCTTTTTGAA CAAATGCGGA TCACTGAGCT TGAGATTGAT
TTTCGCAAAT CCTTATTCTC TTTTACCTTG GCGGATGTCA GAGCGCTTCA ATCCTTCAAA
CCTGTGATTG AAGCGAACAT AGACAAAATC GTTGATGACT TCTATGGCCT GCAAACCAGT
GTATCTGAAA TTGCATTGTT GATTGGCGAC TCCGACACAC TGGCTCGTTT GCGTACCGCC
CAGAGACGCT ATGTGCTCGA CCTATTTAAT GGTGTGTACG ATTTAGAATA TGTAAACAAC
CGCCTAAGGA TTGGCTTAGT ACACAAACGT ATCGGCGTCG AACCCAAACT CTATCTCTCA
GCCGTTCATA CCCTAAAAGA GCTGATTTAT GCGGAGATTA ATAACTCGGT TAAAGACGCT
GCTCAAAATG AACGCATTAG AATCGCCATC GACAAGCTAG TGCTTTTCGA TGTCACCTTA
GTGTTTGATA CTTATATTCG CAGCTTGGTT TCTGAAATTG AGAACGCCAA AGACAAGGCG
GAACGTTACG CTCAAAGCAT GGAGAGCAAA GTCAAAGAGC GTACTCAACA ACTCGAAGAA
TTATCTCAAA CTGATCCATT AACCGGCTTA CTAAACGTGC GTCACTTGCA GGAATTTGCC
ACGCGTATCC TAAGAGCCGC GCAAAGACGT GCCGAACCCG TAAGCGTTAT TTATCTAGAT
GTGGATGACT TTAAACACTT TAATGATAGT CAAGGCCATA GAGCGGGAGA TGAAGTTCTC
AGAGCCGTCG CCCAATCAAT AAAGGAAAGT ACCCGAGCGG AAGATCATTG TTTTCGCTAT
GGGGGTGATG AGTTTTGTAT CATCATGCCC AACTGCCGTG AGGAACAAGC CAGAGATCAT
TTTATCGAAC GCTTTAACCA GAATATCAAG CGCCACCTGA ATAACATCTC ATTAAGCTTT
GGCATCGTCG ATACTGGTCC CTACGACTAC GATGATGCCA ATACCCTAAT CCATAAAGCC
GATCAAAAAA TGTATAGCTA CAAACGCGCA CGAGCAGCTA AATCACAGTT ACCAGCGACG
GCGGCCAATG ATTTAAAAAC CGATATGAAT AACATAGAGA CTCTGAACCT CGACGCAGCA
GAGTCTTGTC CCCATGAATC TGCGGCACCA ATCATAGATA AAATCGCCGA ATAA
|
|---|
| Protein sequence | MLQTEQTLFE QMRITELEID FRKSLFSFTL ADVRALQSFK PVIEANIDKI VDDFYGLQTS
VSEIALLIGD SDTLARLRTA QRRYVLDLFN GVYDLEYVNN RLRIGLVHKR IGVEPKLYLS
AVHTLKELIY AEINNSVKDA AQNERIRIAI DKLVLFDVTL VFDTYIRSLV SEIENAKDKA
ERYAQSMESK VKERTQQLEE LSQTDPLTGL LNVRHLQEFA TRILRAAQRR AEPVSVIYLD
VDDFKHFNDS QGHRAGDEVL RAVAQSIKES TRAEDHCFRY GGDEFCIIMP NCREEQARDH
FIERFNQNIK RHLNNISLSF GIVDTGPYDY DDANTLIHKA DQKMYSYKRA RAAKSQLPAT
AANDLKTDMN NIETLNLDAA ESCPHESAAP IIDKIAE
|
|---|
| |