Gene Shewmr7_0008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_0008 
SymbolglyS 
ID4258041 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp9239 
End bp11305 
Gene Length2067 bp 
Protein Length688 aa 
Translation table11 
GC content49% 
IMG OID638120599 
Productglycyl-tRNA synthetase subunit beta 
Protein accessionYP_736071 
Protein GI114045521 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0751] Glycyl-tRNA synthetase, beta subunit 
TIGRFAM ID[TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0754706 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTTTG AAAACTTACT CATAGAGTTA GGCACTGAAG AATTGCCGCC AAAGGCGCTG 
CGTAAACTGG CTGAGTCTTT CTTAGCGAAC TTCACCGAAG AATTAACCAA AGCCGATTTA
GCTTTTAAAT CAGCAGCTTG GTACGCTGCA CCCCGCCGTT TAGCCATCAA TGTGACTGAA
CTGGCGATTG CTCAAGCGGA CAAAATCGTT GAAAAACGCG GCCCAGCTGT CAGCTCAGCC
TTTGATGCCG AAGGTAAACC AACAAAAGCC GCTGAAGGCT GGGCACGTGG TAACGGTATT
ACCGTTGACC AAGCTGAGCG TTTGGTGACC GACAAAGGTG AATGGCTGGT ATATAACGCC
AAAGTAGAAG GCGTTGAAAC CAAGAGCTTA ATCGCTGCTA TGGCACAACG TGCGCTGGAT
AAGTTACCCA TTCCTAAGCC AATGCGCTGG GGAAGCAGCA AGACACAATT CATTCGCCCT
GTTCACACCG CCACTATGCT GTTAGGCAGT GAGTTAATCG AAGGTGAATT GCTCGGCATT
AAGTCGGCAC GTAATGTTCG TGGCCACCGC TTTATGGGTA CAGGCTTCGA GCTTGATCAT
GCAGACAACT ACCTGACACT GCTGAAAGAA AAAGGTAAAG TCATCGCCGA CTACGAAAGC
CGTAAAGCCT TAATCAAAGC CGATGCTGAA AAAGCGGCCG CTAAGATTGG TGGCACAGCC
GATATCGAAG ACGACCTGCT GGAAGAAGTC ACCTCTTTAG TTGAATGGCC AGTCGTATTA
ACAGCAAGCT TTGAAGAGAA GTTCTTGAAC GTACCTTCAG AAGCCTTGGT TTATACGATG
AAGGGCGATC AGAAATACTT CCCAGTATTC GATGAAGCCG GTAAGTTACT GCCAAACTTC
ATCTTTGTCG CGAACATCGA ATCAAAAGAT CCGGCACAAA TCATTGCGGG TAACGAGAAA
GTGGTTCGTC CACGCTTGGC CGACGCAGAG TTCTTCTTCA ATACCGACAA AAAACACACG
CTGGAATCAC GTTTACCGAG TCTTGAGACC GTCTTGTTCC AACAACAACT CGGCACCTTA
AAAGACAAAG TCACTCGTAT CTCTGCCCTA GCCGCCTTTA TTGCCGAGCA AACTGGTGCT
AACGCCGTTG ATGCCGCCCG CGCAGGTTTA TTGTCTAAAA CAGACTTAAT GACCAATATG
GTGATGGAGT TTACCGATAC TCAAGGCACT ATGGGCATGC ATTACGCCCG CCTAGACGGT
GAAACTGAAG CCGTAGCCTT GGCCATGGAA GAGCAATACA AGCCAAAATT CTCTGGCGAT
ACGGTTCCGA CTGCTGCGGT ATCTTGCGCA GTAGCTTTAG CGGATAAACT CGATACCTTA
GTGGGTATCT TCGGTATTGG TCAGGCACCT AAGGGAGCAG CCGACCCATT CGCACTGCGC
CGCGCAGCTA TCGGTGTGCT ACGCATTATC GTTGAGAACA AGCTACCACT GGACTTAGTG
ACCCTAATTG CTAAGGCTCA GGAGCTCCAT GGAACCAACT TAAGCAACGC GAATGCAAGC
GATGAAGTGC TTGAGTTCTT GATGGCGCGT TTCCGTGCTT GGTACCAAGA TAAAGGTATC
GATGTTGACG TGATCCTCGC CGTATTAGCA CGCCGCCCAA CTCGCCCAGC TGATTTTGAT
AGCCGTATCA ATGCGGTATC ACACTTCAGA AGCTTAGAAG CCTCTAGTGC TCTGGCTGCG
GCGAATAAGC GTGTGTCTAA CATTCTGGCG AAAGTGGAAG GCGAATTACC TACCGCGATT
AACTCGGCTC TGTTAGCCGA AGCCGCAGAA CAAGCATTAG CCGCTAAGCT TGCCGAACTG
CAACCTCAAC TCGCTCCACT GTTTGCAAAT GCAGATTACC AACAGGCATT AACGCTGCTG
TCGAGCTTAC GTGAAAGTGT TGACCAGTTC TTCGAAGACG TGATGGTTAT GGCGGATGAC
GAAGCATTGA AAAACAACCG TTTAGCACTG CTGAATAACC TACGTGAGCA GTTCTTACAT
GTTGCGGATA TTTCTCTGCT TCAGTAA
 
Protein sequence
MNFENLLIEL GTEELPPKAL RKLAESFLAN FTEELTKADL AFKSAAWYAA PRRLAINVTE 
LAIAQADKIV EKRGPAVSSA FDAEGKPTKA AEGWARGNGI TVDQAERLVT DKGEWLVYNA
KVEGVETKSL IAAMAQRALD KLPIPKPMRW GSSKTQFIRP VHTATMLLGS ELIEGELLGI
KSARNVRGHR FMGTGFELDH ADNYLTLLKE KGKVIADYES RKALIKADAE KAAAKIGGTA
DIEDDLLEEV TSLVEWPVVL TASFEEKFLN VPSEALVYTM KGDQKYFPVF DEAGKLLPNF
IFVANIESKD PAQIIAGNEK VVRPRLADAE FFFNTDKKHT LESRLPSLET VLFQQQLGTL
KDKVTRISAL AAFIAEQTGA NAVDAARAGL LSKTDLMTNM VMEFTDTQGT MGMHYARLDG
ETEAVALAME EQYKPKFSGD TVPTAAVSCA VALADKLDTL VGIFGIGQAP KGAADPFALR
RAAIGVLRII VENKLPLDLV TLIAKAQELH GTNLSNANAS DEVLEFLMAR FRAWYQDKGI
DVDVILAVLA RRPTRPADFD SRINAVSHFR SLEASSALAA ANKRVSNILA KVEGELPTAI
NSALLAEAAE QALAAKLAEL QPQLAPLFAN ADYQQALTLL SSLRESVDQF FEDVMVMADD
EALKNNRLAL LNNLREQFLH VADISLLQ