| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3940 |
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| Symbol | |
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| ID | 4254503 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4703556 |
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| End bp | 4705181 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638120588 |
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| Product | protein translocase subunit yidC |
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| Protein accession | YP_736060 |
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| Protein GI | 113972267 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000301662 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000640431 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGAATCTC AACGCAATAT ATTGCTAATA GGACTACTGT TTGTCAGCTT TTTGCTGTGG
CAACAGTGGC AAGCAGACAA AGCTCCAAAA CCCGTTGCAA CCGAATCGTC TGTAGTGGCG
AATGCGACCA CTAATCACAG TGCTGATGTT CCAGAAGCAG ATACAGGTGT GCCAGCCGCA
ATGACGGCAA CGCAAAATCT GATCACTGTT AAGACTGATC AGCTCGATGT ACAAATCAAC
CCTGTGGGTG GTGACATCGT TTTTGCAGCT CTGGTTTCAC ATAAATTGGA ACAGGGTAAA
GACCAGCCAT TTGTTTTGCT AGAGCAAACC AAAGATTTCA CCTATATCGC TCAGAGTGGC
CTGATTGGCC GTGATGGTAT CGATAGCAGT GCTAAAGGTC GTGCCGCATT TGCTGCCAGC
AAAACTGAAT TTACCTTAGC CGATGGCCAA GACACCTTAG AAGTACCATT GACCTATGTG
GCTGATAACG GTGTGACTTA CACAAAAGTG TTTGTTTTCC ATCGTGGCAA GTTTAACGTT
GATATCGATT ACAAAATCAA CAACACCTCA GCTGCTCCAT TGCAAGTTCA GATGTACGGT
CAGATTAAAC AGACCATCAA GCCATCTGAA AGCAGCATGA TGATGCCAAC TTACCGTGGC
GCAGCGTTCT CGACTCAAGA TGTACGTTAC GAAAAGTACA AGTTTGAAGA TATGAGCAAG
AGCAACCTCA ATCAACCGAC TCTCGGTGGT TGGGCGGCAA TGCTGCAACA TTACTTCGTA
TCGGCTTGGA TTCCACCAGC AACCGATAGC AACACCATTT TCTCGAGTGT AAGTGCTGGC
GGTTTAGCTA ACATTGGTTT CCGTGGCGCG GTATATGATA TTGCACCAGG TGCAACTCAA
GAAATTAGCT CACAGTTTTA TGTTGGTCCT AAGGATCAAA AAGCGCTATC TGCGTTATCT
GATACCTTAA ACCTGGTTGT TGATTACGGT TTCCTTTGGT GGTTAGCCGT TCCAATCCAC
TGGTTATTGA TGTTCTATCA ATCATTTGTG GGTAACTGGG GTGTGGCGAT TATCCTGATC
ACCTTAACCG TTCGTGGTTT ACTGTTCCCG CTGACTAAAG CGCAGTACAC CTCAATGGCG
AAGATGCGTA ACCTACAGCC AAAACTGCAG GATTTGAAAG AACGCTTCGG CGATGACCGT
CAAAAGATGG GTCAAGCCAT GATGGAACTG TACAAGAAGG AAAAAGTGAA CCCTATGGGT
GGCTGTTTAC CTATCCTGCT ACAGATGCCA ATCTTCATTG CCTTGTACTG GGTATTGTTA
GAAAGCTTCG AGCTGCGTCA CGCGCCATTT ATGTTATGGA TCCACGACTT ATCTGTACAA
GATCCATACT ACATTCTGCC GCTGCTGATG GGTGCGTCTA TGTTTGTGAT GCAAAAAATG
CAACCCATCG CACCGACTAT GGACCCAATG CAAGTGAAGA TGATGCAATG GATGCCTGTG
ATCTTTACCG TATTCTTCCT GTGGTTCCCA TCGGGTCTAG TACTGTACTG GTTAGTGGGT
AACATTGTTG CCATCATCCA GCAGAAGATT ATTTATGCAG GTCTAGAGAA AAAAGGCTTA
AAATAA
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| Protein sequence | MESQRNILLI GLLFVSFLLW QQWQADKAPK PVATESSVVA NATTNHSADV PEADTGVPAA
MTATQNLITV KTDQLDVQIN PVGGDIVFAA LVSHKLEQGK DQPFVLLEQT KDFTYIAQSG
LIGRDGIDSS AKGRAAFAAS KTEFTLADGQ DTLEVPLTYV ADNGVTYTKV FVFHRGKFNV
DIDYKINNTS AAPLQVQMYG QIKQTIKPSE SSMMMPTYRG AAFSTQDVRY EKYKFEDMSK
SNLNQPTLGG WAAMLQHYFV SAWIPPATDS NTIFSSVSAG GLANIGFRGA VYDIAPGATQ
EISSQFYVGP KDQKALSALS DTLNLVVDYG FLWWLAVPIH WLLMFYQSFV GNWGVAIILI
TLTVRGLLFP LTKAQYTSMA KMRNLQPKLQ DLKERFGDDR QKMGQAMMEL YKKEKVNPMG
GCLPILLQMP IFIALYWVLL ESFELRHAPF MLWIHDLSVQ DPYYILPLLM GASMFVMQKM
QPIAPTMDPM QVKMMQWMPV IFTVFFLWFP SGLVLYWLVG NIVAIIQQKI IYAGLEKKGL
K
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