| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3939 |
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| Symbol | trmE |
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| ID | 4254502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4702090 |
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| End bp | 4703451 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638120587 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_736059 |
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| Protein GI | 113972266 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000114268 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGACAACTG ACACTATCGT GGCACAGGCC ACCGCGCCCG GACGGGGCGG CGTGGGTATC
ATTCGTATCT CTGGTGATAA GGCAACCGAT GTGGCCATGG CCGTATTGGG TCATTTACCT
AAACCCCGTT ACGCCGATTA CTGCGACTTT AAAAATGCCT CAGGCCAAGT GATAGACCAA
GGTATCGCCC TGTTTTTTAA AGGCCCTAAT TCCTTCACTG GTGAAGATGT ATTAGAGCTG
CAGGGCCACG GTGGTCAAAT CGTCCTCGAT ATGCTGATCA AGCGCGTATT AGAAGTCGAA
GGCATTCGTA TCGCCAAACC AGGCGAGTTT AGCGAACAAG CCTTTATGAA CGATAAGCTG
GACTTAACCC AAGCCGAAGC GATTGCCGAC CTTATCGATG CCACCAGTGA GCAAGCCGCT
AAAAGCGCGC TGCAATCACT GCAAGGTGAG TTTTCGAAGG AAGTTCATGA GCTAGTGGAT
CAAGTCACCC ATCTGCGTTT ATACGTCGAA GCCGCGATTG ATTTCCCCGA TGAAGAAGTC
GACTTTTTAA GTGATGGCAA AATTGCCAAC GCACTCTATA AAATCATCGA CAAACTCAGC
GTCGTCCAAG CCAGTGCCAA GCAAGGCTCG ATTATCCGCG AAGGTATGAA AGTGGTGATT
GCCGGTCGCC CCAATGCAGG AAAATCCAGT CTGCTTAATG CGCTCGCCGG TAAAGAGTCG
GCGATTGTGA CCGAAATTGC AGGTACCACC CGCGACGTAT TGCGTGAGCA TATCCATTTA
GATGGTATGC CACTGCATAT TATCGACACC GCAGGCCTGC GTGACACCAC AGATACGGTT
GAACAAATCG GTATCGAGCG GGCGTGGAAC GAAATCAACA GCGCCGATCG CGTGTTGTTT
ATGGTCGATG GCACCACTAC GGATGCGGTC GATCCCCACG ATATTTGGCC CGATTTTATT
GATCGTCTCC CCGCTAATTT AGGCGTGACA GTTGTCCGCA ACAAAGCCGA TCTCACCGGT
GAGAACCTCG CTATGACCGA AGAAAAAGGT TACAGCGTGT ATCGGATCTC GGCTAAAACC
GGTCTGGGCG TCGAGGAATT AAAACAACAC CTTAAATCCT TGATGGGTTA TCAGAGTAAT
CTCGAAGGTG GCTTTATCGC CCGTCGTCGT CACCTCGAAG CATTGGATGT TGCCGCAAGC
CATCTTCAAC TCGGTAAAGA ACAATTAGAG ATTTACCTCG CAGGTGAACT GTTAGCGGAA
GAACTGAGAA TGGCGCAATT AGCCCTGTCC GAAATCACAG GCCGCTTCAC CTCAGACGAT
CTACTGGGCA AAATTTTCAG CTCATTCTGT ATCGGCAAAT AA
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| Protein sequence | MTTDTIVAQA TAPGRGGVGI IRISGDKATD VAMAVLGHLP KPRYADYCDF KNASGQVIDQ
GIALFFKGPN SFTGEDVLEL QGHGGQIVLD MLIKRVLEVE GIRIAKPGEF SEQAFMNDKL
DLTQAEAIAD LIDATSEQAA KSALQSLQGE FSKEVHELVD QVTHLRLYVE AAIDFPDEEV
DFLSDGKIAN ALYKIIDKLS VVQASAKQGS IIREGMKVVI AGRPNAGKSS LLNALAGKES
AIVTEIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTTDTV EQIGIERAWN EINSADRVLF
MVDGTTTDAV DPHDIWPDFI DRLPANLGVT VVRNKADLTG ENLAMTEEKG YSVYRISAKT
GLGVEELKQH LKSLMGYQSN LEGGFIARRR HLEALDVAAS HLQLGKEQLE IYLAGELLAE
ELRMAQLALS EITGRFTSDD LLGKIFSSFC IGK
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