| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3938 |
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| Symbol | |
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| ID | 4254501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4700437 |
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| End bp | 4701984 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638120586 |
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| Product | TGF-beta receptor, type I/II extracellular region |
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| Protein accession | YP_736058 |
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| Protein GI | 113972265 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000127118 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTACTC CTGCAGATGC GCCAAAGTGG CCACGCCAAA TACCCTATAT TATCGCCAGC
GAAGCCTGTG AACGTTTTAG CTTTTATGGC ATGCGCAACA TTCTAACACC ATTCTTGATG
ACGGCACTTT TGCTCTCTAT TCCCGAAGAT CTTCGCGGGG CTGTGGCAAA GGATGTATTC
CATTCGTTTG TGATTGGGGT GTATTTTTTC CCCTTACTCG GTGGTTGGAT CGCAGATAGA
TTCTTTGGTA AGTACAACAC TATTTTGTGG TTAAGCTTAC TCTATTGTGT GGGCCATGCA
TTCTTGGCGA TTTTTGAGCA CAGCGTGCAA GGCTTTTATA CCGGTTTATT CTTAATTGCC
TTAGGTTCGG GCGGGATTAA GCCTTTAGTT TCTTCCTTTA TGGGCGATCA GTTTGATCAG
AGCAACAAGT CTTTGGCGCA AAAAGCCTTC GATATGTTCT ATTTTACGAT CAACTTCGGT
TCCTTCTTCG CATCATTGTC TATGCCATTG TTACTCAAGA ATTTTGGCGC AGCAGTGGCT
TTCGGGATCC CCGGTGTGTT GATGTTTATC GCTACAGTGT TTTTCTGGTT AGGCCGTAAA
CGTTATGTGC ATATGCCGCC AGAGCCTAAA GATCCCCATG GATTTTTACC CGTGATCCGT
AGCGCTTTGC TGACTAAGAT CGAAGGCAAG GCCAATATAG GTTTAGTGTT AGCCTTAATT
GGTGGTGTTT CTGCCGCTTA TGCGTTGGTG AATATTCCGA CCCTAGGTAT TGTGGCCGGT
TTGTGTAGCG CTATGGTGCT GCTGATGGGA TTTGTAGGCC TTGGGGCGTC ATTACAGCTT
GAGCGCGCGC GAGGGATTCA TCCTGATGCG GCCGTGGATG GTGTGCGTTC AGTGTTGCGT
ATTTTGGTGT TGTTCGCCTT AGTGACGCCA TTTTGGTCCT TGTTCGATCA AAAAGCTTCT
ACATGGATTT TGCAGGCTAA CGATATGGTC AAACCCTCGT GGTTTGAACC TGCCATGATG
CAGGCATTAA ATCCGCTGTT AGTGATGCTG TTGATCCCAT TCAATAACTT CGTTTTATAT
CCTGCGATTG AGCGTATGGG CGTGAAATTA ACTGCGCTGC GTAAAATGGG GGCGGGGATA
GCGATTACTG GCTTAAGCTG GATTGTAGTT GGGACGATTC AGTTGATGAT GGATGGTGGC
TCGTCGCTGT CTATCTTCTG GCAGATCTTA CCCTACGCCT TACTGACCTT TGGTGAAGTA
TTAGTTTCGG CGACGGGTTT AGAATTTGCC TACAGCCAAG CACCTAAGGC GATGAAGGGC
ACTATTATGA GTTTTTGGAC CTTATCGGTT ACCGTCGGTA ACCTTTGGGT ATTGCTGGCC
AATGTGAGCG TAAAAAGCCC AGCTGTGACG GAACAAATTG TTCAAACCGG TATGAGTGTG
ACGGCATTCC AAATGTTCTT CTTCGCGGGA TTTGCGATTT TGGCAGCGGT CATCTTCGCG
CTCTATGCTA GGTCTTATCA AATGCAGGAC CATTATCGCC AAGTCTAG
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| Protein sequence | MTTPADAPKW PRQIPYIIAS EACERFSFYG MRNILTPFLM TALLLSIPED LRGAVAKDVF
HSFVIGVYFF PLLGGWIADR FFGKYNTILW LSLLYCVGHA FLAIFEHSVQ GFYTGLFLIA
LGSGGIKPLV SSFMGDQFDQ SNKSLAQKAF DMFYFTINFG SFFASLSMPL LLKNFGAAVA
FGIPGVLMFI ATVFFWLGRK RYVHMPPEPK DPHGFLPVIR SALLTKIEGK ANIGLVLALI
GGVSAAYALV NIPTLGIVAG LCSAMVLLMG FVGLGASLQL ERARGIHPDA AVDGVRSVLR
ILVLFALVTP FWSLFDQKAS TWILQANDMV KPSWFEPAMM QALNPLLVML LIPFNNFVLY
PAIERMGVKL TALRKMGAGI AITGLSWIVV GTIQLMMDGG SSLSIFWQIL PYALLTFGEV
LVSATGLEFA YSQAPKAMKG TIMSFWTLSV TVGNLWVLLA NVSVKSPAVT EQIVQTGMSV
TAFQMFFFAG FAILAAVIFA LYARSYQMQD HYRQV
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