| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3922 |
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| Symbol | |
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| ID | 4254485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4683917 |
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| End bp | 4686046 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638120570 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_736042 |
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| Protein GI | 113972249 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000715438 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0397715 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTATTTA AATATTCAGT TGTGGGTTTG GCCGTTGGGT CTGCATTAAT GGCGGCTATG
CCTGTCATGG CCGAAGCGCC AAATGATACA AATATTGAGC GTATTAATGT CACTGGCCGT
ACTTTTAATG ACTATAAAGT AGGTAGTGCA TCGGGCGCTA TGCGTGGTGA TATCGATTTA
ATGGATACCC CACAATCAGT GAACGTGATC CCCGACTTTG TGACCGATGA GCAATTAGCG
ACTAACCTTG CCGAAGTCTT AGTTAACGAT TCAAGTGTTA CTGCGGGTAC CACTCGCTGG
AACCGCCAAG TCTTCAGTAT TCGTGGTTTT GAATTAGATT CGGGCAACGG TTATCTGATC
AACGGCCACC AGCAATGGTC TCATTACGTC CAACCTATCG AAACCCTGCA ACAGGTTGAA
GTGCTTAAAG GCCCTTCGAG CATGTTGTAT GGCCAATCTG GTCCTGGCGG TTTGGTGAAT
ATGGTCACCA AGAAGCCTAC CTACGATTCT ATGCTCAACT TAGGGTTTGA TACCGACGGT
TACGGCTCTA CCCGCGCACA GTTAGACGCT GGTGGCAGCT TAAACGAGGC TCAGAGCATT
CGTTATCGCG GTGTGTTAGT CAAACAAGAC ACCAAATACT GGCGTGAATA TTCAACGACC
GATGAAAACC AAGAGCGTGA TCGTTGGTTA GGTTATTTGA ACCTAGAATT CGATATCAGT
GATGATCTGT TATTGTCACT GAAATACGAC CATACCCAAG ATAAAACCGG TATCGATGCT
GGCAGTTGGT TAGATAAGCA AGGCAATGTT GTCGGCCAGC GTAAAACCAT CTGGGATGCG
CCTTGGGCCT TTACCGATAA CACGGTTTCA AACTTAGGTG CCGATTTAAC TTGGCATATG
AATGACGATT GGAAAGTTAA ACTGGGCTAT AACGATCAAC AGTTTAATCG CCAGCGTTTC
GATTCTGCAC CGCAATATAA TGAAGATCCA TTTACTAGTG GTTATAAAAT AAAGCCATTC
GATCGTTACG ACGACTGGCA ACATAAAACC GCTTATGTCG ATTTTACGGG CGAGTTTGCA
TTAGCGGGTA TGGAGCACCA ACTCCTTATA GGTGCTAACT ACTTAGACTA CTATTATGGT
CAATATATTG AGAGATATGT TAATCAAGCA ACCAAAGGGA TGATTACAGT TATTCCTGGT
CAACCCGTAG CAAAACCAGA TTTAGACTAT CATCGTGATA GCACAAAATC TGAAAGTGAA
TACAAATACT ACGGTTTCTA TCTGCAAGAT TTAATGACCA TCAATGAACA ATGGAAATTG
CTTGCAGGGG TTCGTTATGA CGAACAGAAA AAAGATGGTT TTGGTGAAAA CAGTTATGCC
GTATCGCCTA AATTTGGGGT GATCTACTCA CCAATGACCA ATGGCAGCAT ATATGTTAAC
TACTCTAAGA GCTTTACACC GCAAGGTGGT ATTACCGACC CTCTAAATGT TAATCATGAC
ACTAACCTTA AACCAGAATA TGGCATTCAA TATGAAGTAG GGACTAAGTG GGAACTGTTT
GACGATAGCT TGTTATTAAC GGCTGCGGTA TTTGATGTCA CACTGGAGAA TATCTCTATA
AATGAGGTGC TGACAGCAAG TGACCCACGA AGTGAGGATG GAAAATACAC TTCAATCACC
ACCCAAGGCG GAGAGCAAAA ACACCGCGGC TTTGAAGTCG GTGCCCAAGG TAAGCTAGGC
GATAGCTGGT TTGTGACTTC ATCTATGATG TACCTCGATG CTGAGTATCA AACGGGTGAT
GAGCGCGAAG GTAAAACGCC TATCGATGCC CCTGAATGGT CGGCGAATAT CTGGACTCGT
TATGAAGTGA CCGATAACTT TGCAATGAAC TTCGGTGCTA TCTATGTTGG CGAGCGTTTT
GCAAACGTGG ATAACACTAT CAGTAAAGAC GGTTATGTTC GCTTCGATAT TGGTGCTGCC
TACACTATGG ATATTATGGG TAAAGACGTA AGCCTCCGCG CGAACGTGAG AAACCTGTTT
GATACCGATT ATATTGATGG CGGCCAATAC AATATGGTGA CTCTAGGCCA AGACCGTAAC
TTCAGCGTGG CACTTGAAGC TAAGTTCTAA
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| Protein sequence | MVFKYSVVGL AVGSALMAAM PVMAEAPNDT NIERINVTGR TFNDYKVGSA SGAMRGDIDL
MDTPQSVNVI PDFVTDEQLA TNLAEVLVND SSVTAGTTRW NRQVFSIRGF ELDSGNGYLI
NGHQQWSHYV QPIETLQQVE VLKGPSSMLY GQSGPGGLVN MVTKKPTYDS MLNLGFDTDG
YGSTRAQLDA GGSLNEAQSI RYRGVLVKQD TKYWREYSTT DENQERDRWL GYLNLEFDIS
DDLLLSLKYD HTQDKTGIDA GSWLDKQGNV VGQRKTIWDA PWAFTDNTVS NLGADLTWHM
NDDWKVKLGY NDQQFNRQRF DSAPQYNEDP FTSGYKIKPF DRYDDWQHKT AYVDFTGEFA
LAGMEHQLLI GANYLDYYYG QYIERYVNQA TKGMITVIPG QPVAKPDLDY HRDSTKSESE
YKYYGFYLQD LMTINEQWKL LAGVRYDEQK KDGFGENSYA VSPKFGVIYS PMTNGSIYVN
YSKSFTPQGG ITDPLNVNHD TNLKPEYGIQ YEVGTKWELF DDSLLLTAAV FDVTLENISI
NEVLTASDPR SEDGKYTSIT TQGGEQKHRG FEVGAQGKLG DSWFVTSSMM YLDAEYQTGD
EREGKTPIDA PEWSANIWTR YEVTDNFAMN FGAIYVGERF ANVDNTISKD GYVRFDIGAA
YTMDIMGKDV SLRANVRNLF DTDYIDGGQY NMVTLGQDRN FSVALEAKF
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