Gene Shewmr4_3921 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3921 
Symbol 
ID4254484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp4682945 
End bp4683727 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content49% 
IMG OID638120569 
ProductDeoR family transcriptional regulator 
Protein accessionYP_736041 
Protein GI113972248 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1349] Transcriptional regulators of sugar metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.230254 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0231627 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGGTT TTATGAATAA ACGAAACACA CAGCAACGAC GTCACAGTAT TATCAGCATT 
CTGAATGAAC AGGGTGAAGT GAGTGTCGAT GAGTTGTCAT TACGTTTCGA AACCTCAGAA
GTGACTATTC GTAAAGACTT GGCAGAACTT GAAAAAACCG GACTATTGCT GCGCCGCTAT
GGTGGTGCTG TGGCTATTCC CGATGAAGTC ACGCAACAGT TTTCTGCCAA GATTGCCCCT
AATAAGTTAT CCATTGCTAA AGCAGCGGCG CAGCTGATCA AAGATCACAA TCGCATCATT
ATCGACAGTG GCACCACCAC TTCAGGCCTG ATCGCCGAGC TGAATCACAA GCGTGGGCTG
GTGGTCATGA CCAATGCCCT GCATTTGGCC AATGCGATTC ATGAGCTTGA AAATGAGCCC
ACTCTATTGA TGACCGGTGG AACCTGGGAT CCGCATTCCG AGTCGTTTCA GGGGCAAGTA
GCCGAGCAAG TATTACGCTC CTATAACTTC GACCAACTCT TTATCGGTGC CGACGGTATC
GATTTAGCGC GCGGCACCAC CACCTTTAAT GAGCTAACGG GCTTAAGTAA GGTGATGGCA
GAGGTTTCCC GCGAAGTGAT CGTTATGGTG GATTCGGACA AAATTGGTAA GCGGATACCT
AACTTAGAAC TACCTTGGTC GCAAATCAGT GTGCTAGTTA CCGATGCTCG CATCGAAGAG
AGCGCCCTTA ACCAAATTAC CGAGCAAGGC GTGAAAGTCA TCTTAGCGCC CTACTCGCCT
TAG
 
Protein sequence
MKGFMNKRNT QQRRHSIISI LNEQGEVSVD ELSLRFETSE VTIRKDLAEL EKTGLLLRRY 
GGAVAIPDEV TQQFSAKIAP NKLSIAKAAA QLIKDHNRII IDSGTTTSGL IAELNHKRGL
VVMTNALHLA NAIHELENEP TLLMTGGTWD PHSESFQGQV AEQVLRSYNF DQLFIGADGI
DLARGTTTFN ELTGLSKVMA EVSREVIVMV DSDKIGKRIP NLELPWSQIS VLVTDARIEE
SALNQITEQG VKVILAPYSP