Gene Shewmr4_3908 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3908 
Symbol 
ID4254471 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp4661715 
End bp4662353 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content44% 
IMG OID638120553 
Producthypothetical protein 
Protein accessionYP_736028 
Protein GI113972235 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2227] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00391987 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.262705 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCAGAT GTCCCCTTTG TCATAGCACT CAAACACAGT TGTTCTTACA GGACAAAAAG 
CGGTGTTTTT ATGTTTGCCA GACATGTGGA CTCACCTTTG CCGACGCAAA TAGTCACCTT
CCTCCCGCGG CAGAAAAACA GCGTTATGGC CGCTCGCGGA TTGCCGCCAA ACAGCGCCAA
CTCTCGCAAT TTATTTTACC GCTACTGACA CAAATACAAT TGCAGCAAAA AGGTAGCCTC
ACAGGCTTAA ATTTTGGACG CGTGCTTGAT CAAACTAGTC TGGCGACTAT TGAATCGGCG
GGACATACTT TTAAGCAATA TGACCCTTTC TTCGCGCCAG ACCACGAACC CCTAAAACAA
GAGTATGATT TTATTTGCTG CTACCGAGTA TTTGAACACT TCCAGCACCC CAGCAGAGAA
TGGAGCTTAC TGACCCGTTT ACTCAAGCCA GGCGGTTGGT TAGCGATTAG CACTCCCTTA
TTAATTGATT TAGAAGGCTT TGCTAAGTGG CATTATAAAA ACAATCTCAC CCATGTGAGT
TTTTACCAAA GACAAACTTT TGAATACTTG GCAAGCAATA GCGATTTTGA ACTATTATTT
GCCGCAAAAG ACCTCGTTTT GATGCAAAAA ACATCATAA
 
Protein sequence
MRRCPLCHST QTQLFLQDKK RCFYVCQTCG LTFADANSHL PPAAEKQRYG RSRIAAKQRQ 
LSQFILPLLT QIQLQQKGSL TGLNFGRVLD QTSLATIESA GHTFKQYDPF FAPDHEPLKQ
EYDFICCYRV FEHFQHPSRE WSLLTRLLKP GGWLAISTPL LIDLEGFAKW HYKNNLTHVS
FYQRQTFEYL ASNSDFELLF AAKDLVLMQK TS