Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3906 |
Symbol | engB |
ID | 4254469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 4659439 |
End bp | 4660098 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638120551 |
Product | ribosome biogenesis GTP-binding protein YsxC |
Protein accession | YP_736026 |
Protein GI | 113972233 |
COG category | [R] General function prediction only |
COG ID | [COG0218] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR03598] ribosome biogenesis GTP-binding protein YsxC/EngB |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00433433 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.382454 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACTGAAT CTCATATAGA TTTTCGCAGG GCGAAGTTTT TAATCAGTGC ACCTGACATT GCACATTTGG ATCAATATCT GCCCGGCGAC GTTGGTGTTG AGATTGCTTT TGCTGGTCGC TCCAATGCCG GAAAATCGAG TGCGCTCAAT GCATTAACTG AGCAGAAAAA CTTGGCGCGT ACCAGTAAAA CGCCGGGCCG CACTCAGCTA ATTAACGTAT TTGAACTCGA TGCGCAGCGC CGATTAGTCG ATTTACCGGG TTACGGCTTT GCCCAAGTGC CTTTAGCCAT GAAATTAAAG TGGCAACAAT CCCTCGGCGA ATATTTGCAG AAGCGTGCAT GCTTAAGTGG CGTTGTGGTA TTGATGGATA TTCGTCATCC GTTAAAAGAT TTGGATATGC AGATGATCGA ATGGGCGGTT GCGAGTGAAA TTCCAGTACT CGCATTACTG ACTAAGTCCG ATAAATTGGC GCAAAGCGCG AAGATGAAAA CCGTGAACGA AGTGCGTAAA GCGCTGGTTG AGTTTGGTGA TTGGGTACAG GTTGAGCCTT TTTCTGCGCT CAAGGGCACG GGCAAACCTA AAGTGCTTAG TATCTTAAAT GAATGGTGTC ATCCGCAATG GTTGGCCGAT GAGTTAGAAA ACCAAGACGA CGCTGAGTAA
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Protein sequence | MTESHIDFRR AKFLISAPDI AHLDQYLPGD VGVEIAFAGR SNAGKSSALN ALTEQKNLAR TSKTPGRTQL INVFELDAQR RLVDLPGYGF AQVPLAMKLK WQQSLGEYLQ KRACLSGVVV LMDIRHPLKD LDMQMIEWAV ASEIPVLALL TKSDKLAQSA KMKTVNEVRK ALVEFGDWVQ VEPFSALKGT GKPKVLSILN EWCHPQWLAD ELENQDDAE
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