Gene Shewmr4_3906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3906 
SymbolengB 
ID4254469 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp4659439 
End bp4660098 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content47% 
IMG OID638120551 
Productribosome biogenesis GTP-binding protein YsxC 
Protein accessionYP_736026 
Protein GI113972233 
COG category[R] General function prediction only 
COG ID[COG0218] Predicted GTPase 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR03598] ribosome biogenesis GTP-binding protein YsxC/EngB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00433433 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.382454 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTGAAT CTCATATAGA TTTTCGCAGG GCGAAGTTTT TAATCAGTGC ACCTGACATT 
GCACATTTGG ATCAATATCT GCCCGGCGAC GTTGGTGTTG AGATTGCTTT TGCTGGTCGC
TCCAATGCCG GAAAATCGAG TGCGCTCAAT GCATTAACTG AGCAGAAAAA CTTGGCGCGT
ACCAGTAAAA CGCCGGGCCG CACTCAGCTA ATTAACGTAT TTGAACTCGA TGCGCAGCGC
CGATTAGTCG ATTTACCGGG TTACGGCTTT GCCCAAGTGC CTTTAGCCAT GAAATTAAAG
TGGCAACAAT CCCTCGGCGA ATATTTGCAG AAGCGTGCAT GCTTAAGTGG CGTTGTGGTA
TTGATGGATA TTCGTCATCC GTTAAAAGAT TTGGATATGC AGATGATCGA ATGGGCGGTT
GCGAGTGAAA TTCCAGTACT CGCATTACTG ACTAAGTCCG ATAAATTGGC GCAAAGCGCG
AAGATGAAAA CCGTGAACGA AGTGCGTAAA GCGCTGGTTG AGTTTGGTGA TTGGGTACAG
GTTGAGCCTT TTTCTGCGCT CAAGGGCACG GGCAAACCTA AAGTGCTTAG TATCTTAAAT
GAATGGTGTC ATCCGCAATG GTTGGCCGAT GAGTTAGAAA ACCAAGACGA CGCTGAGTAA
 
Protein sequence
MTESHIDFRR AKFLISAPDI AHLDQYLPGD VGVEIAFAGR SNAGKSSALN ALTEQKNLAR 
TSKTPGRTQL INVFELDAQR RLVDLPGYGF AQVPLAMKLK WQQSLGEYLQ KRACLSGVVV
LMDIRHPLKD LDMQMIEWAV ASEIPVLALL TKSDKLAQSA KMKTVNEVRK ALVEFGDWVQ
VEPFSALKGT GKPKVLSILN EWCHPQWLAD ELENQDDAE