Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3901 |
Symbol | tdh |
ID | 4254464 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 4652305 |
End bp | 4653330 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638120546 |
Product | L-threonine 3-dehydrogenase |
Protein accession | YP_736021 |
Protein GI | 113972228 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase [TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00409651 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.55097 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCAC TAAGCAAGTT AAAAGCCGAA AAAGGCATTT GGTTAGTCGA TGCGCCTAAG CCTGAAATGG GCCACAACGA TCTGCTGATC AAGATTAAAA AGACCGCCAT TTGTGGCACC GACATGCACA TCTACAACTG GGACGAATGG TCACAAAAAA CCATTCCTGT GCCTATGGTG GTAGGTCACG AGTATGTGGG TGAAGTGGTT GATATCGGTC AAGAAGTTCG TGGCTTTAAA ATTGGTGACC GCGTTTCTGG CGAAGGCCAT ATCACCTGCG GCCACTGTCG TAACTGCCGC GCTGGTCGCA CCCATTTATG CCGCAACACC TCAGGTGTGG GTGTAAACCG CGAAGGTTCA TTTGCCGAAT ACTTAGTGAT CCCAGCCTTT AACGCCTTCA AAATTCCCGA TGATATCAGC GATGATTTAG CGTCTATCTT CGACCCGTTC GGTAACGCAG TGCACACAGC GCTGTCATTC GACTTAGTGG GCGAAGACGT GTTAATCACT GGCGCGGGCC CTATCGGTAT TATGGCTGCG GCCGTATGTC GCCACGTTGG TGCTCGCCAT GTGGTCATTA CCGATGTTAA TGAATACCGC TTAGAGTTAG CCCGTAAAAT GGGTGCTACC CGCGCCGTTA ACGTGGCTCA GGAAAGCCTG AAAGACGTGA TGAAAGAACT CGGCATGACC GAAGGCTTCG ACGTGGGTCT AGAAATGTCT GGCGTACCGT CAGCCTTCCA CGCCATGTTA GATACCATGA ACCACGGTGG CAAAATCGCG ATGCTCGGTA TCCCGGGTGG CGAAATGGCG ATTGATTGGA GCAAAGTGAT CTTCAAGGGT CTGGTCATCA AAGGCATTTA CGGCCGTGAA ATGTTCGAAA CTTGGTACAA GATGGCAAGC TTGATCCAAT CTGGCTTAGA TATTTCGCCT ATCATCACGC ACCACTACAA GATTGATGAT TTCCAAAAAG GCTTCGACGC TATGGGCTCG GGCCAATCCG GTAAAGTCAT CCTCAGCTGG GATTAA
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Protein sequence | MKALSKLKAE KGIWLVDAPK PEMGHNDLLI KIKKTAICGT DMHIYNWDEW SQKTIPVPMV VGHEYVGEVV DIGQEVRGFK IGDRVSGEGH ITCGHCRNCR AGRTHLCRNT SGVGVNREGS FAEYLVIPAF NAFKIPDDIS DDLASIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA AVCRHVGARH VVITDVNEYR LELARKMGAT RAVNVAQESL KDVMKELGMT EGFDVGLEMS GVPSAFHAML DTMNHGGKIA MLGIPGGEMA IDWSKVIFKG LVIKGIYGRE MFETWYKMAS LIQSGLDISP IITHHYKIDD FQKGFDAMGS GQSGKVILSW D
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