| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3836 |
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| Symbol | |
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| ID | 4254399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4578873 |
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| End bp | 4582007 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638120481 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_735956 |
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| Protein GI | 113972163 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACGTT TTTTTATTGA TCGCCCCATC TTTGCGTGGG TGATCGCGTT AATCATTATG
TTGGCGGGGG TATTGTCTAT TCGATCCCTG CCAGTCTCGC AGTACCCCAG TATTGCGCCA
CCGACAGTGG TGATCAGTGC GAACTACCCA GGTGCATCGG CCAAAATCGT TGAAGACTCA
GTGACTCAGG TGATTGAGCA ACGTATGAAA GGTATCGACC ACCTACGTTA TATCGCATCG
ACCAGTGATA GCTTCGGTAA CGCGTCTATT ACCTTAACCT TTAACGCTGA GGCCGATCCC
GATATCGCTC AGGTTCAAGT ACAGAACAAG TTACAGGGCG CGATGACCTT GTTACCTCAA
GAGGTGCAAT CGCAAGGGGT TAACGTTAAC AAGTCAAGTT CTGGCTTCTT GATGGTACTG
GGCTTCGTCT CGACCGACGG TTCTTTGGAC AAGGGTGATA TCGCCGACTA TGTGGGCGCT
AACATCCAAG ATCCTATGAG CCGTGTACCG GGCGTGGGCG AAATTCAGTT ATTCGGCGCC
CAATACGCGA TGCGTATATG GTTAGATCCA CTGAAACTGA CCCAATACAA CCTCACCAGT
TTAGATGTGG TGAGCGCCAT TCGTGCGCAA AACGCGCAGG TTTCTGCGGG TCAACTCGGT
GGCACGCCAT CGCTGCCGGG ACAAGAGCTA AACGCGACAG TATCGGCGCA GAGCCGCCTG
CAAACGCCTG AACAGTTCCG CAAGATCATC ATCAAATCCG ATACTTCGGG TGCGAACGTG
TTCTTGGCTG ATGTGGCGCG TGTCGAACTG GGCTCAGAAA GCTATGCAGT AGAGTCTCTC
TACAACGGTA AACCCGCTTC TGGTATTGCG ATTAAACTGG CTACCGGTGC TAACGCTCTG
GATACCGCGG AAGCGGTTCG CGCTAAAGTT GAAGAGTTAC GTCCCTTCTT CCCTGCTGGG
TTAGATGTGG TTTACCCCTA CGATACAACG CCATTCGTTG AGAAATCGAT TGAAGGCGTA
GTACACACTC TGCTGGAAGC GATCGTACTG GTGTTCGTCA TCATGTACCT CTTCCTGCAA
AACTTCCGTG CGACCTTAAT TCCAACGATT GCTGTGCCTG TGGTATTGCT GGGTACCTTT
GCGATTCTGT CGGCAACGGG CTTCTCCATC AACACCCTCA CCATGTTTGC TATGGTGCTG
GCGATTGGTC TCCTCGTGGA CGACGCGATT GTGGTGGTGG AAAACGTTGA GCGGGTTATG
GCCGAAGAGG GCCTAAGTCC ACTCGAGGCG ACCCGTAAGT CGATGGATCA GATCACTGGC
GCGTTAGTCG GTATCGGTCT GACACTGTCA GCGGTATTCG TACCTATGGC GTTTATGTCG
GGTTCTACCG GGGTTATTTA TCGTCAGTTC TCGATCACTA TCGTCTCTGC GATGGCGCTG
TCTGTACTGG TGGCCTTGAT CTTAACGCCT GCACTCTGTG CGACCATGTT GAAACCGTTG
AAGAAGGGCC ACGGTCATAT CGAAACGGGC TTCTTTGGCT GGTTTAACCG TGGCTTCGAT
CGCTTAACTA ACCGTTACGA ATCGAGCGTT GCGGGTATTG TGAAGCGTAG CTTCAGAGTC
ATGATGATCT ATGCAGCCTT AGTCGTGGCT GTGGGCTGGA TTTTCATGCG CATGCCAACG
GCATTCTTAC CTGACGAAGA CCAAGGTATC TTGTTTACGC AGGCGATTTT GCCAACCAAC
TCTACCCAAG AAAGCACCAT GAAAGTGTTA GAGAAAGTCT CTGATCACTA CATGGCAGAA
GATGCCGTTA AATCGGTATT CAGCGTGGCG GGCTTCAGTT TCGCGGGTCA AGGCCAAAAC
ATGGGTATTG CCTTCGTTGG CTTGAAGGAT TGGTCAGAGC GTGAAGCGCC GGGTATGGAT
GTACAGTCCA TTGCTGGCCG TGCTATGGGC GTATTCAGCC AAATGAAAGA AGCCTTCGTA
TTCGCCTTCG TACCGCCAGC GGTAATCGAG TTGGGTACGG CAAACGGTTT CGATATGTAC
CTGCAAGATA AGAGTGGCCA AGGACACGCT AAGTTACTCG AGGCGCGTAA CCAATTGCTG
GGTATGGCAG CACAGAATCC AAACCTAGTA GGCGTTCGTC CAAACGGTCA GGAAGATGCG
CCAATCTATC AGTTGCATAT CGACCATGCC AAACTGAGTG CCTTAGGCAT TGAGATTGCG
AACGTTAACA GCGTACTCGC AACCGCATGG GGTGGTTCTT ATGTAAACGA CTTTATCGAC
CGCGGTCGTG TGAAGAAAGT TTACGTACAG GGCGATGCTC AATACCGTAT GCAACCTGAA
GACTTAGACA CTTGGTACGT GCGTAACAAC AAGGGCGACA TGGTGCCATT CTCGGCCTTC
GCGACTGGCG CATGGGAATA TGGTTCACCT CGTCTAGAAC GTTTCAACGG TTTACCTGCC
ATGAACATTC AAGGCGCAAC GGCTCCTGGT TTCAGTACCG GTGCGGCGAT GAATATCATG
GAAGATATGG TGAAACAGTT ACCACCTGGC TTTGGTATCG AGTGGAACGG CCTATCCTAT
GAGGAACGTT TATCGGGTAA CCAAGCGCCA GCGCTGTATG CCCTGTCGAT TCTAGTAGTG
TTCCTAGTAT TGGCTGCACT GTATGAAAGC TGGTCCGTAC CGTTCGCAGT AATCCTAGTG
GTTCCGCTCG GTATTATCGG TGCCTTGCTG GCGATGAATG GTCGTGGCTT GCCAAATGAC
GTGTTCTTCC AGGTAGGTCT GTTGACGACG GTCGGTTTGG CGACGAAGAA CGCCATCTTG
ATTGTGGAAT TCGCCAAAGA ATTCTATGAG AAAGGTTCGG GTCTTATCGA GGCGACCTTA
CATGCGGTAC GTGTGCGTTT GCGTCCAATT CTGATGACGT CACTCGCCTT CGGTCTGGGT
GTGGTACCGT TAGCGATTAG TACGGGTGTA GGTTCTGGTA GCCAGAACGC CATCGGTACT
GGTGTACTCG GCGGTATGAT GAGTTCGACC TTCTTAGGTA TCTTCTTCGT GCCGTTGTTC
TTCGTGATTG TGGAACGTAT CTTCAGTAAG CGCGAGAAGA AAGGTAAAGA AGAAAAGCCG
ACCTCGGCAG AGTAA
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| Protein sequence | MARFFIDRPI FAWVIALIIM LAGVLSIRSL PVSQYPSIAP PTVVISANYP GASAKIVEDS
VTQVIEQRMK GIDHLRYIAS TSDSFGNASI TLTFNAEADP DIAQVQVQNK LQGAMTLLPQ
EVQSQGVNVN KSSSGFLMVL GFVSTDGSLD KGDIADYVGA NIQDPMSRVP GVGEIQLFGA
QYAMRIWLDP LKLTQYNLTS LDVVSAIRAQ NAQVSAGQLG GTPSLPGQEL NATVSAQSRL
QTPEQFRKII IKSDTSGANV FLADVARVEL GSESYAVESL YNGKPASGIA IKLATGANAL
DTAEAVRAKV EELRPFFPAG LDVVYPYDTT PFVEKSIEGV VHTLLEAIVL VFVIMYLFLQ
NFRATLIPTI AVPVVLLGTF AILSATGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
AEEGLSPLEA TRKSMDQITG ALVGIGLTLS AVFVPMAFMS GSTGVIYRQF SITIVSAMAL
SVLVALILTP ALCATMLKPL KKGHGHIETG FFGWFNRGFD RLTNRYESSV AGIVKRSFRV
MMIYAALVVA VGWIFMRMPT AFLPDEDQGI LFTQAILPTN STQESTMKVL EKVSDHYMAE
DAVKSVFSVA GFSFAGQGQN MGIAFVGLKD WSEREAPGMD VQSIAGRAMG VFSQMKEAFV
FAFVPPAVIE LGTANGFDMY LQDKSGQGHA KLLEARNQLL GMAAQNPNLV GVRPNGQEDA
PIYQLHIDHA KLSALGIEIA NVNSVLATAW GGSYVNDFID RGRVKKVYVQ GDAQYRMQPE
DLDTWYVRNN KGDMVPFSAF ATGAWEYGSP RLERFNGLPA MNIQGATAPG FSTGAAMNIM
EDMVKQLPPG FGIEWNGLSY EERLSGNQAP ALYALSILVV FLVLAALYES WSVPFAVILV
VPLGIIGALL AMNGRGLPND VFFQVGLLTT VGLATKNAIL IVEFAKEFYE KGSGLIEATL
HAVRVRLRPI LMTSLAFGLG VVPLAISTGV GSGSQNAIGT GVLGGMMSST FLGIFFVPLF
FVIVERIFSK REKKGKEEKP TSAE
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