| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3832 |
|---|
| Symbol | |
|---|
| ID | 4254395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4575384 |
|---|
| End bp | 4575950 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638120477 |
|---|
| Product | LemA family protein |
|---|
| Protein accession | YP_735952 |
|---|
| Protein GI | 113972159 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1704] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 54 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.911812 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAAC TGTTATTAGG ATTAGCGCTG ATTTTTATCG TCACCTACCT TTGGTACGTC
AGCCTAGTCA AAAAGCGCAA TACCGCCCTC GAAGCCCTGT CGGGGATCGA TGTGCAGTTA
GCCAAGCGCG CCGATCTTGT GCCCAATATC CTCAAAATCG CCAAGCGATT TATGGATCAT
GAAAAGTCAT TACTCACTGA AATCACTGAG CTGCGCACCC AATTAACCCG CAATTACAAC
AAGACAGATC CGAATGCGGT GAAAGAGCAT ATTGCGCAAG CTGAGAAGCT GAACGATAAA
ATGGGTGCCT TGATGGTGAG CGTTGAAAGC TATCCCGAGC TGAAGTCGGA CAATACTATG
CTTGAGGCGA TGCAAACCTA TAACGAGGTT GAAGCCCATA TCTCTGCTGC CCGCCGTTTC
TATAACTCGG CGGTGTCTGA GTTAAATACT GCCGTTGAGA TTTTCCCCGG GTCGATTATT
GCGTCGATGG CAAACATTAA GGTGATGCCA TTCTACGAGG TGAATGAAGC CTCTAAAGCG
CCGATAGACG CGGCGGATTA TCTGTAA
|
|---|
| Protein sequence | MDKLLLGLAL IFIVTYLWYV SLVKKRNTAL EALSGIDVQL AKRADLVPNI LKIAKRFMDH
EKSLLTEITE LRTQLTRNYN KTDPNAVKEH IAQAEKLNDK MGALMVSVES YPELKSDNTM
LEAMQTYNEV EAHISAARRF YNSAVSELNT AVEIFPGSII ASMANIKVMP FYEVNEASKA
PIDAADYL
|
|---|
| |