Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3830 |
Symbol | |
ID | 4254393 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 4573586 |
End bp | 4574305 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638120475 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_735950 |
Protein GI | 113972157 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 45 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.582426 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGCAA CGTATTCTTC GCCACTTTGC CTTAAGTCGA TAGCCACCGT TAGCCTTGGT TTGTGGTTGG CTTGGGGAAG TGTTGCGGCC GCGTTTGCCG ACGAAGCTAA GCCTAAGCCC CGTATTGTGG CCCGTTATTC TGAAAGCGGT ATTGTGAGTA ACACTGGGCA AGAAAAAGTC AAAGTTTATC AATATCTACA GGCCAATGGT GTCACGGCTT TTACCGATAA AGCGCCGACC ACCAATGAGT ATCAAATCCT GCTCTATGAC TGCTTTGCCT GTCGTCCTGA CTCCAAAATT GACTGGAATG GTATTCGGCT GTTTACCCGC AATTACGATA GCTTGATCAG CCGTGCGGCC CATAAACATC AATTAGACCC TGCACTTATC CGCGCCGTGA TCCACGCCGA ATCGGCCTTT AATGCCAGAG CCTTGTCGCG TACAGGCGCA ATGGGCCTGA TGCAATTAAT GCCCGAAACC GCCAAAGAGA TGGGCGTGAC CAATGCCTTT TTGCCGGAGG AGAATATTCT CGGCGGCAGT AAGTATTTGG CGCAAATGCT AAAACAGTTC AATGGTGATA TTGCGCTAGC CTGCGCGGCC TATAATGCGG GGCCTACAAC TGTGACTCAG TACAACGGTA TTCCGCCCTA TCCAGAAACC CAAGCCTATG TGGAACGGGT GCAAATTCTG CTAAAACGTT ACCGCAGCGC CAAAGTCTAG
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Protein sequence | MSATYSSPLC LKSIATVSLG LWLAWGSVAA AFADEAKPKP RIVARYSESG IVSNTGQEKV KVYQYLQANG VTAFTDKAPT TNEYQILLYD CFACRPDSKI DWNGIRLFTR NYDSLISRAA HKHQLDPALI RAVIHAESAF NARALSRTGA MGLMQLMPET AKEMGVTNAF LPEENILGGS KYLAQMLKQF NGDIALACAA YNAGPTTVTQ YNGIPPYPET QAYVERVQIL LKRYRSAKV
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