| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3824 |
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| Symbol | |
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| ID | 4254387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4567706 |
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| End bp | 4569685 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638120469 |
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| Product | cytochrome-c oxidase |
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| Protein accession | YP_735944 |
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| Protein GI | 113972151 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02843] cytochrome o ubiquinol oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0778781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTTTC TCGGTAAATT AAGCTTAGAT GCGATCCCGT ATCATGAGCC TATCATCATG
GTGACCCTTG CGGTTGTTGC CGTGATAGGT CTGTACGTCG CAGCCTTGAT CACTAAACAC
AAAAAATGGG GTGTGCTTTG GCACGACTGG TTAACCTCGG TTGACCATAA ACGCCTCGGT
ATTATGTACA TAGTGCTTGC CTTCATCATG CTGATCCGCG GTTTTTCCGA CGCCATCATG
ATGCGTACCC AACAGGCACT GGCCACCAAT GGCGCAGCAG GTTATCTGCC GCCAGAACAT
TACGACCAAA TCTTCACTGC CCACGGCGTG ATCATGATTA TCTTTATGGC GATGCCATTT
ATGATCGGTC TAATGAACTT AGTGCTGCCA CTGCAAATCG GTGCCCGCGA CGTTGCCTTC
CCCTTCTTGA ACAACCTCAG CTTCTGGTTA ACCGCGTCAG GTGCCGTGCT GATCAATATT
TCATTAGGTT TAGGTGAATT CGCCCGTACC GGTTGGGTAG CTTACCCGCC GTTGTCTGAA
CTGGCTTACA GTCCGGGCGT CGGGGTCGAT TACTACATCT GGGCGCTGCA GATTTCGGGG
ATAGGGACAA CCTTAACCGG GGTCAACTTT ATCGCGACTG TGCTTAAGAT GCGTGCTCCA
GGCATGAAGC TGATGCAAAT GCCTATCTTC ACTTGGACTT GTACTTGGGC CAACATCCTG
ATCGTGGCGT CGTTCCCGAT CCTGACCGCG GTTTTAGCGC TGTTAACACT CGATCGCTAC
ATGGGTTTCC ACTTCTTCAC CAATGATGGT GGTGGTAACG CCATGATGTA TATCAACCTG
TTCTGGGCTT GGGGTCACCC TGAAGTGTAC ATCCTGATTT TACCTGCGTT TGGTATCTTC
TCGGATGTGA TTTCAACCTT TACCTCTAAG CGTCTGTTCG GCTATTCCTC AATGGTATGG
GCCAGTGGCG CGATTTCGAT CCTCGGTTTT ATCGTGTGGT TACACCACTT CTTTACCATG
GGCTCGAGTG CCAACGTCAA CGCCTTCTTC GGCGTGATGA CCATGGTGAT TGCGGTCCCG
ACTGGGGTAA AACTGTTTAA CTGGTTGTTC ACTATTTACC GCGGCCGCCT GCGCTTAACC
GTGCCAGTGC TGTGGACCTT AGGCTTTATG GTGACTTTCA CCATTGGTGG TATGACGGGC
GTACTATTAG CCGTACCTGG CGCCGACTAC GTACTGCACA ACAGCTTGTT CCTGATCGCT
CACTTCCATA ACACCATTAT CGGTGGTGCC GTGTTCGGTT ACTTAGCTGG TTTTGCTTAC
TGGTTCCCGA AAGCGACGGG TTTCCACTTA AATGAGCGTT TAGGTAAAGC GTCATTCTGG
TGCTGGCAAA TTGGTTTCTA TGTGGCCTTT ATGCCGCTGT ATGTACTCGG TTTTATGGGT
ATGACTCGCC GTATCAACCA CATTGATAAC CCAGCATGGA ACATGTGGAT CTATATCGCT
GCCGTGGGTG CTTGCATCAT CATGGTCGGT ATCATTCTGC AATTCGTGCA ACTGTACGTG
AGTATCCGTG ACCGCGACCA AAACCGTGAC ACCACGGGCG ACCCATGGAA TGGCCACACA
CTGGAATGGT CAACCGCATC ACCACCACAG TTCTACAACT TTGCTAAGTT GCCACAAGTG
TCTGATATCG ATGCCTTTAC CGATGCCAAA GAAAAAGGCA CCGCCTATCA ACGCCTCAAA
CACTATCAGC CAATCCATAT GCCGAAAAAT ACCCCGAGCG GTATCTTAAT GGCGCTGGGC
ATTACTGCCG CTGGTTTTGC TGCGATTTGG CACATTCTGT GGCTCGCGAT TGTGGGCATG
GTGAGCGCGT TTATCGTGTT CTTATTCCGT GCTTATAACA ACGATGTCGA CTATTACGTT
CAACCCGATG AAGTGGCACG CATTGAAAAT GCTCACTTAA ACAATGTAGT AAGGGGCTGA
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| Protein sequence | MSFLGKLSLD AIPYHEPIIM VTLAVVAVIG LYVAALITKH KKWGVLWHDW LTSVDHKRLG
IMYIVLAFIM LIRGFSDAIM MRTQQALATN GAAGYLPPEH YDQIFTAHGV IMIIFMAMPF
MIGLMNLVLP LQIGARDVAF PFLNNLSFWL TASGAVLINI SLGLGEFART GWVAYPPLSE
LAYSPGVGVD YYIWALQISG IGTTLTGVNF IATVLKMRAP GMKLMQMPIF TWTCTWANIL
IVASFPILTA VLALLTLDRY MGFHFFTNDG GGNAMMYINL FWAWGHPEVY ILILPAFGIF
SDVISTFTSK RLFGYSSMVW ASGAISILGF IVWLHHFFTM GSSANVNAFF GVMTMVIAVP
TGVKLFNWLF TIYRGRLRLT VPVLWTLGFM VTFTIGGMTG VLLAVPGADY VLHNSLFLIA
HFHNTIIGGA VFGYLAGFAY WFPKATGFHL NERLGKASFW CWQIGFYVAF MPLYVLGFMG
MTRRINHIDN PAWNMWIYIA AVGACIIMVG IILQFVQLYV SIRDRDQNRD TTGDPWNGHT
LEWSTASPPQ FYNFAKLPQV SDIDAFTDAK EKGTAYQRLK HYQPIHMPKN TPSGILMALG
ITAAGFAAIW HILWLAIVGM VSAFIVFLFR AYNNDVDYYV QPDEVARIEN AHLNNVVRG
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