| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3821 |
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| Symbol | |
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| ID | 4254384 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4561904 |
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| End bp | 4565533 |
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| Gene Length | 3630 bp |
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| Protein Length | 1209 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638120466 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
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| Protein accession | YP_735941 |
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| Protein GI | 113972148 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0235394 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTATATCA AAGCATTTGC TCACTACCTT AAGGTCAATC TACTCGTTGC CTTGGCTTAC
TTTGCTGTTG GCAAAATGGG GTTGTTGATT GCCTTACCCC CAGGTTATTC AGCTGCCATC
TGGCCTGCGG CGGGTATTGC CATTGCCTCC TGTCTGATCT GGAACAAGTA TTCACCCTGG
CTTGGGATAT TGGTCGGTTC TTGGCTGATA AATATCAATA TCGGTGGTGA GAACCATTTA
GGTTGGCTGC CCTTAGTGAT TGCCTCTGCC TCTAGCTTAC AGGCCTATGT CTCCGCCAAT
GCTATCCGTC GTATCGATCC CTTGGTGACT CTAGATAGAC CTAATACCGT GATTAAGTCT
TGCCTTAGCC TCGCGCTGAC CTGCATGATT GCCACGACAT TTGGCAATGC TGCCTTAGTG
GCCCATGGCG CTATCCCCAT TAAGGATGCT TTGGGGAGTA CGGTAAATTG GTGGCTGGGT
GATTTACTCG GGGCAGTGAT CTTTATCCCG CTGATTATGC TGTTATTCGA TCAGCGTTCC
ATTTGGCGCT CAAGGCGCAT TCATACAGGG CTGCCGCTGT TAGTCGGATT CTCATTTTGT
GTCGTCGTGT ACTATTACTC GGATATGAAC CAGCGACAGC AGCTGCAAGA TAAATTCCAA
ATTCAGTCTA ATGCGATTAT CAATAGTGTT GAGAGCTTTC AGGGGGCGAA TCTACAGCAA
GTGATTGCGC TCGCGAGCTT ATTCGATAAT AGCGAGCAGG TTTCTGAGGA TGAATTTATC
CAGTTTGGTA AGCGTAACCA ACTGCAATTA GATGGCTTTC GAGCTTGGGC TTGGTCACCG
CTGATAGCCG CAACGGATAA AGATAATTTT GAGGCGGCGA CCCGTAATGA AATCGGTGAA
AATTACCGTA TTCGATACTT AGCCGGAGGG CAACCGAATC CCGACGGTTG GTTGGTGCCA
GTCAAGTTTG TTCAGCCGAT GAATACTAGC CGTGCCGCCC TTGGACTCGA TCTGAATGGC
GAACCTACTC GTGCTGCTGC AATTGCAAAA GTACGTGCGA CCCTATCACC CGTGATGACG
GGTAAGATCC AACTAGCGGA AGATCCCAAT GGTCCGGGTG GGACACTGAT CCTCGCGCCC
GTATTCGACC GTTTAGGGAT TGTTGAGGGC TTTTGCTCGG CGGTGATCGA TCTGCAATCG
ATTATCAATG AAGTGGAACA GGTTAAAGGC TTACATTGGC GCCTTACGGA CATGAGTGCC
GGCGGCGCCT TACTCTACAC TAATAGTCAG AAGATATTCC CTGAGTTTAT GGGGAACATA
CATAGTGACA GGATGGGCCA GTATTATCAG GCCAACCTGA TGCTGGCCGA TAGACACTGG
CATATAGTGA TCTACGAGTC TTACTCTGCC TTGATGGGGG ACACTTTTAG TCTGTCGCTG
CTGCTGTTGC TGCTGGCGTT TATTACCTGC GCCGTCGTGG GCGGCATGAC ATTAGTGTCT
TCGGGAGAAC GCTACCGCAT TGCCGAAAAG GTGGCGGAAA AAACCATGGC GCTCTCAAAG
GAAATTGCCC GTAGCCAGAC CTTCCAAGCT ACCTTAGTGG AGAGTGAGCA AAGGTATCGT
ACCCTGTTCG ACAAGGCGCC AGTGGGGCAC GCCTTAAAAC GCCTAGAGGA TGGGCAGTTT
GTCGCCATCA ACCAAGCCTT TATGGATATT ACCGGCTATA CCCTCGAAGA GTTGCAGGCC
CTAGACCCCT GGGAACTCAC ACCTATTCGT TATCGATTGA GTGAAACCGA GCAGCTCGAG
CGCCTCAAGC AGACTCGCCG TTACGGCCCA TACCAGAAGC ATTACCGTCA TAAGGATGGA
CAAATGGTCG CCGTGAGGCT GAACGGTTCC CTAGTGACTG CCGCCAACGG CGAGCAGCTC
ATCCTGTTTA TTGTGGAAGA CATTACCGAG CAGGAGCGCA CCGTTGCTAG GGTGAATCTG
TTGGCTCAGG TATTCCAGCA AAGCGGCGAA GGCATCGCCA TTATGGATGC CCATGACATC
ATAGTGGATG TGAATAGCGC CTTTACGCAG ATCACCGGCT ACTCGAGAGA CGAGATCATC
GGCAAAAACT GCCGCTCCCT TGAGGCTGAA CGGACCGACC GCAGTATCGA TGCCAGAGTT
CGTGCCGCCC TAGACCAGAC CGGATTTTGG CAGGGTGAAG TATGGGATCG GCATAAGGAT
GGATATGATT TTCCCAAATG GCTGATGATG TCAGTGGTGC GGGATGAGAC GGGATCGGTC
AGCCATTACA TCGGCAGTTT TACCGATATC AGCGAACGCA AAGTCAATGA GGAGCGCATT
CACTTCTTAG CGCATCACGA TTCTTTGACT CTGCTGCCGA ATCGTTTGAG TCTGCAATCA
CGTCTGGAGA CGGTTTTTCA GGAGGCCTTT GTCAGTCAAA CCCAGATTGC CGTGATGTTT
ATCGATATGG ATCATTTCAA AAATATCAAC GACACCTTGG GGCACCATGT CGGCGATATG
TTGCTGCTCG AAGTGGCGCG GCGCCTGAAG AATATTGTGA GCAGCGACGA TATTGTCGCG
CGCTTAGGCG GCGATGAGTT TGTGGTGGTG TTGTCCGATA CGGATCACGA TAGCGTTGCT
AAGGTGGCGG AAGCCCTGCG CAGTGGTTTG AATCAAACCT ACATCATAGA TAACAAGCCA
CTGCATTCAT CACCCAGCAT AGGCATCAGC CTGTTCCCGA CCGATGGCGA CAGTGTTGAG
GCGCTGATGA AAAATGCCGA TATGGCCATG TACCGCGCCA AAGCGGCGGG GCGCAATAAC
TATCAGTTTT TCACCGCCGC GATGAATACC TTAGTGACCG AGCGCCAGCA AATCGAAACC
GGACTCAGGC AAGCCATTGC CCGTGATGAG TTACGACTGC ATTATCAGCC ACAAATCGAT
ATCAACACAG GGCAAATGGT CGGCGTCGAG GCGCTGATCC GTTGGCAACA TCCGGAATTG
GGCTTGGTGG CTCCCGATCG CTTTATCCCT ATCGCCGAAG AGATCGACAT GATTATCCCT
ATCGGCCAAT GGGTGCTAGA GCAGGCGCTC GCTCAGTTGG CCGAATGGCG CGAAAAGGGC
GCCAAGGGAC TGCGGATGGC GGTCAATCTC TCTGCTCATC AGCTACGCAA AGACACCATA
GTTGCGGATA TTATCAATGT GCTGACCAAG CATAAGTTGC CTAAGGGAGC GCTTGAGCTT
GAAATTACCG AGAGCGTGGC CATGCAGTAT CCCGAACAAA ATGCCAAGTT ACTGGCCGAG
CTGCGTCAGC ATGGCATCGA ATTGGCGATT GATGACTTTG GAACGGGTTA CTCGTCACTC
TCGTATTTGA AGCTATTACC TTTAGATAGA CTCAAGTTAG ATAGATCCTT TGTGAAGGAT
ATTGAGAGCG ATCCGAACGA TGCCGCCATC AGTGCGGCAA CGATTTCAAT GGCGCACGAG
TTGGGGCTCA CCGTAGTGGC CGAAGGGGTC GAGAATGAGG CGCAGTTGGT GCTGCTCTCG
AGCATGGGCT GCGATTTAGT GCAGGGTTAT TATTTTAGTA AGCCCTTAGC TGCCGAAGAT
TGTTTACGTT TTATCGAGCG CAATTTTTAA
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| Protein sequence | MYIKAFAHYL KVNLLVALAY FAVGKMGLLI ALPPGYSAAI WPAAGIAIAS CLIWNKYSPW
LGILVGSWLI NINIGGENHL GWLPLVIASA SSLQAYVSAN AIRRIDPLVT LDRPNTVIKS
CLSLALTCMI ATTFGNAALV AHGAIPIKDA LGSTVNWWLG DLLGAVIFIP LIMLLFDQRS
IWRSRRIHTG LPLLVGFSFC VVVYYYSDMN QRQQLQDKFQ IQSNAIINSV ESFQGANLQQ
VIALASLFDN SEQVSEDEFI QFGKRNQLQL DGFRAWAWSP LIAATDKDNF EAATRNEIGE
NYRIRYLAGG QPNPDGWLVP VKFVQPMNTS RAALGLDLNG EPTRAAAIAK VRATLSPVMT
GKIQLAEDPN GPGGTLILAP VFDRLGIVEG FCSAVIDLQS IINEVEQVKG LHWRLTDMSA
GGALLYTNSQ KIFPEFMGNI HSDRMGQYYQ ANLMLADRHW HIVIYESYSA LMGDTFSLSL
LLLLLAFITC AVVGGMTLVS SGERYRIAEK VAEKTMALSK EIARSQTFQA TLVESEQRYR
TLFDKAPVGH ALKRLEDGQF VAINQAFMDI TGYTLEELQA LDPWELTPIR YRLSETEQLE
RLKQTRRYGP YQKHYRHKDG QMVAVRLNGS LVTAANGEQL ILFIVEDITE QERTVARVNL
LAQVFQQSGE GIAIMDAHDI IVDVNSAFTQ ITGYSRDEII GKNCRSLEAE RTDRSIDARV
RAALDQTGFW QGEVWDRHKD GYDFPKWLMM SVVRDETGSV SHYIGSFTDI SERKVNEERI
HFLAHHDSLT LLPNRLSLQS RLETVFQEAF VSQTQIAVMF IDMDHFKNIN DTLGHHVGDM
LLLEVARRLK NIVSSDDIVA RLGGDEFVVV LSDTDHDSVA KVAEALRSGL NQTYIIDNKP
LHSSPSIGIS LFPTDGDSVE ALMKNADMAM YRAKAAGRNN YQFFTAAMNT LVTERQQIET
GLRQAIARDE LRLHYQPQID INTGQMVGVE ALIRWQHPEL GLVAPDRFIP IAEEIDMIIP
IGQWVLEQAL AQLAEWREKG AKGLRMAVNL SAHQLRKDTI VADIINVLTK HKLPKGALEL
EITESVAMQY PEQNAKLLAE LRQHGIELAI DDFGTGYSSL SYLKLLPLDR LKLDRSFVKD
IESDPNDAAI SAATISMAHE LGLTVVAEGV ENEAQLVLLS SMGCDLVQGY YFSKPLAAED
CLRFIERNF
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