| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3809 |
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| Symbol | |
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| ID | 4254372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4547428 |
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| End bp | 4549767 |
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| Gene Length | 2340 bp |
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| Protein Length | 779 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638120454 |
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| Product | RNA-binding S1 domain-containing protein |
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| Protein accession | YP_735929 |
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| Protein GI | 113972136 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.062671 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGACTA TTGCCCAAAT TATTGCTCAG GAACTGAATG TTCAGGAGCA TCAAGTCACT
GCCACCATAG ATTTGCTCGA CAATGGTGCT ACCGTTCCCT TCGTTGCCCG TTACCGTAAA
GAAGCGACTG GGGGCTTAGA TGACACCCAG TTACGTACGC TGCACACTCG TTTAGGTTAT
TTACGCGAGC TGAATGACAG ACGTCAGGTC ATTTTATCCA GCATTCAAAC CCAGGGTAAG
TTAACGCCTG AATTGCAAAG GGAAATTGAA GGCGCGGACA GCAAAACCCG TCTCGAAGAT
CTGTACCTTC CCTTCAAGCC TAAACGCCGT ACTAAGGGCC AAATTGCGAT TGAAGCGGGA
TTAGAGCCGC TTGTTGAAGC TGTGCTTGCC GATCGCAATG CCGATATCGA GGCATTGGCT
GCGGGTTATC TGAATCTCGA AGCGGGCTTT GCCGATACCA AAGCCGTGCT GGAAGGCGCT
CGTTATATTC TCATGGAGCG TTACGCCGAA GATGCGGAAT TACTGCGTAA AGTCCGTGAG
CACTTAAGCC AAAACAGTGT GTTAGAGAGC CGCGTTATCG CCGGCAAAGA GAAGGAAGGC
GCTAAGTTTC GCGACTATTT CGAGCACAAC GAACCTCTGG CGAAAGTGCC GTCACATCGC
GCCTTGGCGA TGTTGCGTGG CCGCAATGAG GGCTTCCTAT CTCTATCCAT GAATGCCGAT
CCTGCTGCAG AAGCGGGTCA GGGCAGTTAC TGTGAAGTGA TCATTAGCGA GCACTTAGGC
TTAAAACTTG GCGAGAGCAC AGTCGATCAA TGGCTTAAGA CCGTTGTGAC CGCCACATGG
CGGATTAAAA TTGCCCTGCA GATGGAAACC GAGTTTATCT CGCAAATGCG TGAGCGCGCC
GAAGCAGAAG CCATTAAAGT GTTTGCCCGC AACTTAGGCG ACTTACTTAT GGCCGCACCA
GCGGGCGCCA AGGCGACTAT GGGTCTAGAC CCGGGGCTAC GCACGGGCGT TAAAGTGGCC
GTGGTGGATA ACACGGGTAA GCTGGTCGCA CATACGACTA TCTTCCCCCA TGCGCCGCAG
AATTTGTGGG ACAAGTCGAT TCGTACCTTA GCCAACTTAG CGCAAATGCA TAAGGTGGAA
TTAATCGCGA TTGGTAACGG CACTGCATCA CGCGAAACTG ACAAGTTAGC GGGTGAGTTG
ATTGCCAGCC TTAAGGATAG CCAACCGCAA CTAACCAAGG TGATGGTGAG TGAGGCTGGT
GCTTCCGTGT ATTCCGCCTC AGAACTCGCT GCGCTGGAGT TCCCTGAGCT GGACGTGTCT
ATTCGTGGCG CCGTTTCGAT TGCACGCCGT TTACAGGATC CCTTAGCGGA ACTGGTGAAG
ATTGAGCCTA AATCCATCGG TGTGGGTCAA TACCAGCACG ATGTAAGCCA AAGCCAGTTG
TCTAGCTCGC TCGAAGCCGT GGTCGAAGAC TGCGTAAACG GTGTGGGCGT GGATTTAAAC
ATGGCGTCAG TGCCTTTGCT GTCGCAGGTG GCGGGGTTAA ACAAAACCTT AGCGAAAAAC
CTGGTTGACT ACCGCGATGC CAATGGTGCC TTCAAAAACC GTAAAGAGCT GCTGAAAGTG
CCACGCTTAG GCCCTAAAGC CTTTGAACAA GCTGCAGGCT TTTTGCGGAT CCGTGATGGC
GACAATCCCT TGGATATGTC GGCGGTTCAC CCCGAAGCCT ATGCGCTAGT CGAAACCATT
GCTAAGACTA AGCAAGTGGA GTTGGCGAGC CTTATCGGTA ATTCTGAGCT GCTACGCAAT
ATCAAGCCGC AGGAGTTTAC GACCCCTGAG TTTGGTTTAC CGACAGTGAC CGACATCCTC
AGCGAGCTGG ATAAACCGGG TCGTGACCCC CGTGGTGAGT TTAAAACCGC CAAATTTAAG
GATGGGGTGG AGGAGCTTAA GGATCTGAAA CCAGAGATGA TCCTCGAAGG CGTTGTCACC
AACGTGACTA ACTTTGGTGC CTTTGTGGAT ATCGGTGTGC ATCAAGATGG TTTAGTGCAT
ATCTCGTCAT TAACCGACAA ATTTATTACC GATCCCCATA CAGTGGTGAA AGCGGGTGAT
GTAGTGAAAG TGAAGGTGAT GGAGGTCGAT GTCGAGCGTC GTCGTATCGG TTTGAGTATG
CGTCTGGATG AGGCTATCGA TCAGAGCAAG GCTCAAACAC GCAGCCCATC TCAAGGTAAG
CCACAGGCTC ATAAGGGCAA TGCCCAGCAT AAGTCTTCGC GTCCTGCGCC AAAAGCGGCA
CCTGTCAATG CGGCCATGGG CAATGCCTTT GCCGACGCTT TCGCAAAGCT GAAAAAGTAA
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| Protein sequence | MQTIAQIIAQ ELNVQEHQVT ATIDLLDNGA TVPFVARYRK EATGGLDDTQ LRTLHTRLGY
LRELNDRRQV ILSSIQTQGK LTPELQREIE GADSKTRLED LYLPFKPKRR TKGQIAIEAG
LEPLVEAVLA DRNADIEALA AGYLNLEAGF ADTKAVLEGA RYILMERYAE DAELLRKVRE
HLSQNSVLES RVIAGKEKEG AKFRDYFEHN EPLAKVPSHR ALAMLRGRNE GFLSLSMNAD
PAAEAGQGSY CEVIISEHLG LKLGESTVDQ WLKTVVTATW RIKIALQMET EFISQMRERA
EAEAIKVFAR NLGDLLMAAP AGAKATMGLD PGLRTGVKVA VVDNTGKLVA HTTIFPHAPQ
NLWDKSIRTL ANLAQMHKVE LIAIGNGTAS RETDKLAGEL IASLKDSQPQ LTKVMVSEAG
ASVYSASELA ALEFPELDVS IRGAVSIARR LQDPLAELVK IEPKSIGVGQ YQHDVSQSQL
SSSLEAVVED CVNGVGVDLN MASVPLLSQV AGLNKTLAKN LVDYRDANGA FKNRKELLKV
PRLGPKAFEQ AAGFLRIRDG DNPLDMSAVH PEAYALVETI AKTKQVELAS LIGNSELLRN
IKPQEFTTPE FGLPTVTDIL SELDKPGRDP RGEFKTAKFK DGVEELKDLK PEMILEGVVT
NVTNFGAFVD IGVHQDGLVH ISSLTDKFIT DPHTVVKAGD VVKVKVMEVD VERRRIGLSM
RLDEAIDQSK AQTRSPSQGK PQAHKGNAQH KSSRPAPKAA PVNAAMGNAF ADAFAKLKK
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