| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3804 |
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| Symbol | |
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| ID | 4254367 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4542191 |
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| End bp | 4542769 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638120449 |
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| Product | putative DNA uptake protein |
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| Protein accession | YP_735924 |
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| Protein GI | 113972131 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[S] Function unknown |
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| COG ID | [COG0316] Uncharacterized conserved protein
[COG0694] Thioredoxin-like proteins and domains |
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| TIGRFAM ID | [TIGR00049] Iron-sulfur cluster assembly accessory protein
[TIGR03341] IscR-regulated protein YhgI |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.472358 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTACTA TTTCCGATGC GGCTCAGGCC CATTTTGTAA AGTTGTTAGC CGATCAACCT
GAAGGCACTC ATATTCGCGT ATTTGTGATC AGTCCAGGTA CCGCACAAGC CGAGTGTGGC
GTGTCTTACT GCCCGCCTGA CGCCGTTGAA AGCGATGATA TTGAATTAGA ATTCAATGGC
TTTAGCGCTA TGGTTGATGA GAAGAGTGCG CCTTTCTTAG AAGAAGCCTC AATCGACTTC
GTAACCGATC AATTAGGTTC GCAATTAACC CTTAAAGCCC CTAACGCTAA AATGCGTAAA
GTGGCTTCAG ATGCGCCTTT AGCCGAGCGT GTTGAGTATG TGATCCAATC TGAAATCAAC
CCACAACTGG CAAGCCATGG TGGTAACATC ATGTTGGTTG AAATCACCCA AGAAGGCGTA
GCAGTACTGC AGTTTGGCGG TGGATGTAAC GGTTGTTCGC AAGTTGATAT CACCCTAAAA
GATGGTATCG AGAAGCAACT ACTCGATATG TTCCCAGGTG AACTCTCTGG TGTGAGCGAT
GTGACCGATC ACCAACACGG CGCGCATTCT TACGCTTAA
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| Protein sequence | MITISDAAQA HFVKLLADQP EGTHIRVFVI SPGTAQAECG VSYCPPDAVE SDDIELEFNG
FSAMVDEKSA PFLEEASIDF VTDQLGSQLT LKAPNAKMRK VASDAPLAER VEYVIQSEIN
PQLASHGGNI MLVEITQEGV AVLQFGGGCN GCSQVDITLK DGIEKQLLDM FPGELSGVSD
VTDHQHGAHS YA
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