Gene Shewmr4_3789 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3789 
Symbol 
ID4254352 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp4527136 
End bp4527756 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content51% 
IMG OID638120434 
ProductLexA repressor 
Protein accessionYP_735909 
Protein GI113972116 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACCGT TGACGCCACG CCAAGCCGAA ATTTTAGAGC TGATTAAACG TAATATTGCC 
GAGACTGGCA TGCCACCCAC CCGGGCCGAA ATCGCCACCC GTTTGGGTTT TAAAAGTGCA
AATGCCGCCG AGGAACACCT TAAGGCATTG GCGAAAAAAG GCTGCATCGA GATCATGCCT
GGCACTTCCC GCGGGATCCG CCTCCCAGTT GAGGAAGAAG ATAACAGCGA ATCTGGCTTA
CCACTAATTG GCCAAGTGGC TGCGGGCGAA CCTATCCTCG CCCAAGAGCA TGTCGAACAG
TATTACCAAG TCGACCCCAG CATGTTCCAC CCAGCCGCCG ATTTCTTGCT GCGCGTCAGA
GGCGACAGTA TGAAGAACAT CGGCATCCTC GAAGGGGATC TGCTCGCCGT TCATAAAGTA
CAGCAAGCGC GCAATGGCCA AGTAGTTGTT GCTCGCGTTG ACGATGATGT AACAGTTAAA
CGCTTTGAAA AGAAAGGGAA TCTCGTTTAT CTACATGCTG AAAATGAAGA TTACTCCCCG
ATTAAAGTCG ATTTAAGTTT CCAAAGTCTA ACAATTGAAG GGCTCGCCGT AGGGGTGATC
CGCAATGGAG ATTGGCTATG A
 
Protein sequence
MRPLTPRQAE ILELIKRNIA ETGMPPTRAE IATRLGFKSA NAAEEHLKAL AKKGCIEIMP 
GTSRGIRLPV EEEDNSESGL PLIGQVAAGE PILAQEHVEQ YYQVDPSMFH PAADFLLRVR
GDSMKNIGIL EGDLLAVHKV QQARNGQVVV ARVDDDVTVK RFEKKGNLVY LHAENEDYSP
IKVDLSFQSL TIEGLAVGVI RNGDWL