| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3789 |
|---|
| Symbol | |
|---|
| ID | 4254352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 4527136 |
|---|
| End bp | 4527756 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638120434 |
|---|
| Product | LexA repressor |
|---|
| Protein accession | YP_735909 |
|---|
| Protein GI | 113972116 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
|---|
| TIGRFAM ID | [TIGR00498] SOS regulatory protein LexA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACCGT TGACGCCACG CCAAGCCGAA ATTTTAGAGC TGATTAAACG TAATATTGCC
GAGACTGGCA TGCCACCCAC CCGGGCCGAA ATCGCCACCC GTTTGGGTTT TAAAAGTGCA
AATGCCGCCG AGGAACACCT TAAGGCATTG GCGAAAAAAG GCTGCATCGA GATCATGCCT
GGCACTTCCC GCGGGATCCG CCTCCCAGTT GAGGAAGAAG ATAACAGCGA ATCTGGCTTA
CCACTAATTG GCCAAGTGGC TGCGGGCGAA CCTATCCTCG CCCAAGAGCA TGTCGAACAG
TATTACCAAG TCGACCCCAG CATGTTCCAC CCAGCCGCCG ATTTCTTGCT GCGCGTCAGA
GGCGACAGTA TGAAGAACAT CGGCATCCTC GAAGGGGATC TGCTCGCCGT TCATAAAGTA
CAGCAAGCGC GCAATGGCCA AGTAGTTGTT GCTCGCGTTG ACGATGATGT AACAGTTAAA
CGCTTTGAAA AGAAAGGGAA TCTCGTTTAT CTACATGCTG AAAATGAAGA TTACTCCCCG
ATTAAAGTCG ATTTAAGTTT CCAAAGTCTA ACAATTGAAG GGCTCGCCGT AGGGGTGATC
CGCAATGGAG ATTGGCTATG A
|
|---|
| Protein sequence | MRPLTPRQAE ILELIKRNIA ETGMPPTRAE IATRLGFKSA NAAEEHLKAL AKKGCIEIMP
GTSRGIRLPV EEEDNSESGL PLIGQVAAGE PILAQEHVEQ YYQVDPSMFH PAADFLLRVR
GDSMKNIGIL EGDLLAVHKV QQARNGQVVV ARVDDDVTVK RFEKKGNLVY LHAENEDYSP
IKVDLSFQSL TIEGLAVGVI RNGDWL
|
|---|
| |