| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3783 |
|---|
| Symbol | |
|---|
| ID | 4254346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 4515612 |
|---|
| End bp | 4518749 |
|---|
| Gene Length | 3138 bp |
|---|
| Protein Length | 1045 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638120428 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_735903 |
|---|
| Protein GI | 113972110 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAAT ATATTATCGA GTCCTCGATC AGACAAAGGC TCATGGTGTT GATTATCGCC
ATGATGATCA CTGTCTGGGG GATACAGGAG CTGCGTAAAA CGCCGCTCGA TGCCCTGCCG
GACTTATCCG ACGTACAGGT GATTATTAAG ACTCCTTATC CGGGTCAAGC GCCAAAATTG
GTTGAAGAAC AAGTAACTTA CCCACTCTCA ACCGCCATGT TAGCCGTGCC CGGTGCAAAA
ACCGTGCGGG GTTTCTCGAT GTTTGGTGAC TCTTATGTGT ATGTGATCTT CGAAGATGGC
ACCGACATCT ATTGGGCGCG TTCGCGGGTG TTGGAGTATT TAAGCCAGAT CAGCAGTCGC
TTACCTCAAG GGGTACAACC CTCACTCGGC CCCGATGCCT CAGGCGTGGG TTGGGTATTT
GAGTACGCAC TGGTCGATCG CTCCGGCAAC TTAGACCTGT CTCAGCTCAA GAGCTTGCAA
GACTGGTATC TCAAACTCGA GCTACAAAGT GTTGCCGGCG TCTCCGAAGT TGCGACCGTT
GGCGGCATGG AACAAACCTA TCAGATCGTG CTTGAGCCGG ACAAAATGGC GATTTATAAG
CTCGATATCG CCGCCGTTAA GCAAGCGATC GATAAAGCCA ACAGCGAGGC AGGTGGTTCT
GTGGTCGAAA TGGCCGAAGC CGAATACATG GTGCGCGCTA AGGGTTATCG CCAAACCTTA
GAGGATTTCC GTGAAATTCC TTTAGGGATC ACTAGCCCAT CCGGCACAGG CTTGTTGCTT
AAGGATGTTG CGACCGTCCG TAAAGGCCCA GCTTCTCGCC GTGGTATTGC CGAGCTAGAT
GGCGAAGGCG AAGTCGTGGG CGGTATTGTG GTCATGCGTT ACGGTGAAAA CGCCCTCGCA
ACTATCGATG CGGTCAAAGC CAAACTTGAA GAGTTAAAAA CCGGTCTGCC TGACGGCGTG
GAAATCATTC CAACCTATGA CCGTTCGCAA CTGATCCAAA AGTCCGTCGA CAACCTATTC
AGCAAAGTGG TCGAAGAAAT GCTGGTCGTG GGCTTAGTGT GTCTGCTGTT TTTGCTGCAT
GCGCGCTCAA CCTTAGTGGC CGTTATCACC TTGCCACTGT CGATTCTCAT CGCCTTTATT
GTGATGAACA AAATGGGCGT GAATGCCAAC ATCATGAGCC TTGGCGGTAT CGCCATTGCT
ATCGGTGCGG TCGTTGACGG TGCCATCGTT ATGATCGAAA ACCTGCACAA ACATTTGGAG
CATTTTAAAG CCGAGCACGA CCGTGAGCCT TCGGTAAAAG AGCATTGGCG TATTGTGACC
GAGGCTTCGA TTGAAGTCGG CCCAGCGCTA TTTTTCTCGC TGATTATCAT CACCTTAAGC
TTTGTGCCCG TCTTCGCGCT AGAGGCACAG GAAGGACGCT TATTCGCACC GCTCGCCTAC
ACCAAAACCT TTGCTATGGC GGCGGCCGCA TTTTTATCTA TTACCTTAGT GCCCATTCTC
ATGGGTTACT TTATCCGAGG GAAAATCCCA AGCGAGCGCA GTAACCCTAT CAGTCGCGTA
CTGATTGCCC TGTATCAACC GGCATTAAAA CTGGTACTTA AGTTCCCTAA AGTCACCATA
GTGCTTGCCT TAGTGGCATT GGCGAGTGCT TGGTATCCTA TGACGCGCAT GGGCAGTGAG
TTTATGCCCG CCCTCGAAGA GGGGGATTTA CTCTATATGC CAACGGCACT GCCTGGGATC
AGCGCCAGTA AAGCCGCCGA AGTGCTACAA CAGACCGACC GTTTGATTAA AACCGTCCCT
GAAGTGGCCC GCGTATTCGG CAAGGTCGGC CGCGCCGAAA CCGCAACCGA TCCCGCGCCG
CTGACCATGC TCGAAACCAC GATTATGCTC AAACCCCATA ACGAATGGCG TGAGGGCATG
ACCTTAGACG GCATCATTAA TCAGTTGCAG CAAACGGTGA AAGTGCCCGG GTTAACCAAC
GCTTGGGTGC AACCGATTAA AACCCGTATC GATATGCTGT CGACGGGGAT TAAAACCCCC
GTGGGGATTA AGATCACCGG CGCCGATGTC AATGAGTTAC AAACCCTAGG CGCTAAGATT
GAGGCTATCT TGAGTAAAGT GCCGCACACC AAATCGGCCT ACGCCGAACG CAGTGGTGGC
GGTCGCTATA TTGATATCAG CCCCAAACTC GATGTAGCCG CCCGCTATGG TATGACACTA
CAGGATATCC AAGATGTAGT ACGTTACGCG ATTGGCGGTA TGGATATTGG CGAGTCGGTG
CAGGGCTCAG AGCGTTACCC CATCAACCTG CGTTACCCAC GCGAACTGCG TGACAATATC
GAGAAACTGC GCGAACTGCC GGTGATCACT AAATCAGGCC ATTATTTGCC ACTGCGTAAC
TTGGCCGACA TCGAAATTAC CGATGGCGCG CCAATGCTTA AGAGTGAAAA CGGCCGCTTA
ATTTCGTGGG TGTTTATCGA TATCGAAGGC ACTTCGATTG GTGAATATAT CGCGGCTGCC
AAAACAGCCT TGGATGAGGA ACTCGTGGTC CCAGCCCGTT ACAGCTACAG CTTTGCGGGT
CAGTACGAGT ACATGCAGCG GGTCGACGCT AAACTCAAGC AAGTGATCCC CATGGCACTC
GGGGTGATCT TTATCCTGCT GATGATGACC TTTGGCTCGA CCATGCAGGC CAGCATTATT
ATGCTCAGTC TTCCCTTCGC CCTCGTGGGT AGCACTTGGT TGTTGTATCT ACTCGACTAC
AACATCTCGG TCGCCGTTGC CGTGGGGATG ATCGCCCTTG CGGGGGTCGC CGCCGAATTC
GGGGTGGTGA TGTTGGTGTA CCTCAATAAC GCCATTAAAC ATAGGCAGGA GAAAAACACC
TACCACACAG TCGAGGACTT AAAAGAAGCC TTGATTGAAG GTGCGGTAAT GCGTATTCGA
CCTAAAGCAA TGACAGTAGC AACCATCTTC TTCGGCCTCT TGCCCATCAT GTGGGGTGCG
GGTTCGGGTA ACGATGTGAT GCAAAAAATC GCCGCACCTA TGGTCGGCGG TATGGTGACA
GCACCGATAT TGTCGCTGTT TGTTCTGCCT GCACTGTATC TGTTGATCTA CGCTCGCCAA
ATCAATAAAA CCGAATAA
|
|---|
| Protein sequence | MLKYIIESSI RQRLMVLIIA MMITVWGIQE LRKTPLDALP DLSDVQVIIK TPYPGQAPKL
VEEQVTYPLS TAMLAVPGAK TVRGFSMFGD SYVYVIFEDG TDIYWARSRV LEYLSQISSR
LPQGVQPSLG PDASGVGWVF EYALVDRSGN LDLSQLKSLQ DWYLKLELQS VAGVSEVATV
GGMEQTYQIV LEPDKMAIYK LDIAAVKQAI DKANSEAGGS VVEMAEAEYM VRAKGYRQTL
EDFREIPLGI TSPSGTGLLL KDVATVRKGP ASRRGIAELD GEGEVVGGIV VMRYGENALA
TIDAVKAKLE ELKTGLPDGV EIIPTYDRSQ LIQKSVDNLF SKVVEEMLVV GLVCLLFLLH
ARSTLVAVIT LPLSILIAFI VMNKMGVNAN IMSLGGIAIA IGAVVDGAIV MIENLHKHLE
HFKAEHDREP SVKEHWRIVT EASIEVGPAL FFSLIIITLS FVPVFALEAQ EGRLFAPLAY
TKTFAMAAAA FLSITLVPIL MGYFIRGKIP SERSNPISRV LIALYQPALK LVLKFPKVTI
VLALVALASA WYPMTRMGSE FMPALEEGDL LYMPTALPGI SASKAAEVLQ QTDRLIKTVP
EVARVFGKVG RAETATDPAP LTMLETTIML KPHNEWREGM TLDGIINQLQ QTVKVPGLTN
AWVQPIKTRI DMLSTGIKTP VGIKITGADV NELQTLGAKI EAILSKVPHT KSAYAERSGG
GRYIDISPKL DVAARYGMTL QDIQDVVRYA IGGMDIGESV QGSERYPINL RYPRELRDNI
EKLRELPVIT KSGHYLPLRN LADIEITDGA PMLKSENGRL ISWVFIDIEG TSIGEYIAAA
KTALDEELVV PARYSYSFAG QYEYMQRVDA KLKQVIPMAL GVIFILLMMT FGSTMQASII
MLSLPFALVG STWLLYLLDY NISVAVAVGM IALAGVAAEF GVVMLVYLNN AIKHRQEKNT
YHTVEDLKEA LIEGAVMRIR PKAMTVATIF FGLLPIMWGA GSGNDVMQKI AAPMVGGMVT
APILSLFVLP ALYLLIYARQ INKTE
|
|---|
| |