| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3774 |
|---|
| Symbol | |
|---|
| ID | 4254337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4508189 |
|---|
| End bp | 4509937 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638120419 |
|---|
| Product | signal recognition particle-docking protein FtsY |
|---|
| Protein accession | YP_735894 |
|---|
| Protein GI | 113972101 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0552] Signal recognition particle GTPase |
|---|
| TIGRFAM ID | [TIGR00064] signal recognition particle-docking protein FtsY |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00390438 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGA AAGGTTTTTT CTCCTGGTTT CGTAAAGATA AATCACAAGA TGAGGTTGTC
GAGCAAACCC CAGTCTCTAC TCCATCGCAA ACCGAGCAAG CCGAAGCATT AGCAAAGCAG
CACGCTGAAG AAGCCCGTCT CGCGGCTGAA AAGGCGGCCG CCGAACAGGC TTTAGCCGAC
AAATTAGCGG CCGAAAAAGC AGAAGCAGAA GCCCAGCGTG TTGCCGAAGA GCAAGCTGCA
CGTATAGCCG AACAACAGGC CGCCGAAGCC GCGCATTTAG CGGCGGAGCA AGCTCTAGCA
GAGCAGTTAG CCGCTGAACA AGCGCAAGCG GAAAGAGTTG CAGCAGAACA AGCGGCAAAA
GCTCAAGCAG AAGCGGAAGC GGAAGCCCTG CGCATTGCCG AAGAGCAAGC TGCACGTTTA
GCCGAACAAC AAGCGGCCGA AGCCGCGCAT TTAGCGGCGG AACAAGCTCT AGCAGAGCAG
TTAGCCGCTG AACAAGCAGA AACCGAAAGA GTTGCCGCAG AACAAGCGGC AAAAGCTCAA
GCAGAAGCAG AAGCAGAAGC AGAAGCAGAA GCAGAAGCAG AAGCAGAAGC CCAGCGCATT
GCTGAAGAGC AAGCAGCACG TTTAGCCGAA CAACAGGCGG CCGAAGTTGC GCGTTTAGCG
GCGGAGCAAG CTCAGGCAGA ACAGTTAGCC GCTGAACAAG CAGAAGCCGA AAGAGTTGCT
GCAGAAGCCC AAGCAGAAGC AGAGCGAGTT GCCGCTGCAC AGGTCCAAGC TGAACAACCC
CTTGAGCAAC AACCCGAACC TCAGGCAAAA CCCGCCAAAG AAAGCTTTTT CGCCCGACTA
AAACGCGGCT TGATGCGCAC TAGCGAAAAT ATTGGTAGCG GTTTCATCGG GTTATTTCGT
GGTAAAAAAA TCGATGATGA TCTGTTTGAA GAGTTGGAAG AGCAGCTGTT AATCGCCGAC
GTGGGTGTCG AAACGACTTC ACGCCTTATC CAAAGCCTGA CCGAACATGC GTCTCGCAAG
CAACTGAAGG ATGCCGAAGC GCTCTACGAC CTGCTGCGTG ATGAAATGCA GAAGACGCTC
GATCCTGTCG CTATCCCTTT AGTGCCTGAA AATGCTAACG GCCCCTATGT GATTCTAATG
GTCGGTGTTA ACGGTGTGGG TAAAACCACC ACTATCGGTA AACTGGCGAA GCAATATCAG
CGTCAGGGTA AGTCTGTGAT GTTAGCGGCG GGCGATACCT TCCGTGCTGC AGCGGTTGAG
CAATTACAGG TTTGGGGTCA ACGCAATAAT ATTCCCGTGG TGGCTCAGCA TACGGGCGCA
GACAGTGCCT CGGTACTTTT CGATGCGCTG CAAGCGGCCA AGGCCCGTAA GATTGATATA
TTGATCGCCG ATACCGCGGG TCGTCTGCAA AACAAGTCGC ATCTGATGGA AGAGTTAAAG
AAAGTGGTGC GGGTGATGAA GAAGCTCGAC CTTGAGGCGC CACACGAAGT GATGCTGACC
TTAGATGCGA GCACGGGCCA AAATGCCATT AGCCAAGCGC AGCTATTCCA AGAGGCTGTT
GGCGTTACTG GCATGACCAT CAGCAAGCTC GACGGTACCG CCAAGGGCGG CGTGGTGTTT
GCGATTGCCG ATAAGTTTAA AATCCCGCTA CGTTATATTG GCGTGGGTGA GCAAATTGAT
GATTTGCGTA CCTTTAATTC TAAAGAATTT ATTGATGCCT TGTTCACTCA AGAGAAAGCG
GATAGCTAA
|
|---|
| Protein sequence | MAKKGFFSWF RKDKSQDEVV EQTPVSTPSQ TEQAEALAKQ HAEEARLAAE KAAAEQALAD
KLAAEKAEAE AQRVAEEQAA RIAEQQAAEA AHLAAEQALA EQLAAEQAQA ERVAAEQAAK
AQAEAEAEAL RIAEEQAARL AEQQAAEAAH LAAEQALAEQ LAAEQAETER VAAEQAAKAQ
AEAEAEAEAE AEAEAEAQRI AEEQAARLAE QQAAEVARLA AEQAQAEQLA AEQAEAERVA
AEAQAEAERV AAAQVQAEQP LEQQPEPQAK PAKESFFARL KRGLMRTSEN IGSGFIGLFR
GKKIDDDLFE ELEEQLLIAD VGVETTSRLI QSLTEHASRK QLKDAEALYD LLRDEMQKTL
DPVAIPLVPE NANGPYVILM VGVNGVGKTT TIGKLAKQYQ RQGKSVMLAA GDTFRAAAVE
QLQVWGQRNN IPVVAQHTGA DSASVLFDAL QAAKARKIDI LIADTAGRLQ NKSHLMEELK
KVVRVMKKLD LEAPHEVMLT LDASTGQNAI SQAQLFQEAV GVTGMTISKL DGTAKGGVVF
AIADKFKIPL RYIGVGEQID DLRTFNSKEF IDALFTQEKA DS
|
|---|
| |