| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3771 |
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| Symbol | |
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| ID | 4254334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4505434 |
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| End bp | 4506291 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638120416 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_735891 |
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| Protein GI | 113972098 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000120601 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTTTC AAACGCAATC AATGGCACTA ACAGTCCCTC AGGGCAGCAG TAGTTTAGAA
GCTTATATCC ATTCAGTGAC TAGCATGACA ATGTTAGACG CTGAGACTGA GTATGAGTTA
GCCAAGCGTT TGCAGGAAAC GGGTGATCTG CAAGCGGCGA AGCAACTGAT TATGTCGCAC
TTACGTTTTG TGGTGCACGT TGCTAAGGGC TACTCAGGTT ACGGTCTGCC ACAGGCGGAT
TTGATCCAAG AAGGCAATAT CGGTCTGATG AAAGCGGTTA AGCGCTTCGA TCCCGATGTG
GGCGTCCGTC TAGTGTCTTT TGCTGTGCAC TGGATTAAAG CTGAAATTCA CGAATATGTG
CTGAAAAACT GGCGTATTGT TAAAGTCGCA ACCACCAAAG CACAACGTAA GTTGTTCTTT
AATATCCGTA AAGCGAAAAC TCGCCTCGGT TGGTTTAGCG ATGATGAAGT CGCAATGGTG
GCAGAAAACT TAGGTGTATC TAAGGCCGAT GTGACTGAGA TGGAATCACG TATGGCGGCG
CAGGATCCTG CGTTTGACCT CAGCAGTGAT AATGATGATG AGCAGGATTT TGCCCCTGTG
CATTATCTCG AAGATCATTC GTCGGATTTA GCCGAAAACA TCGAAAACGA TAACTGGGAA
TCCAATGCCC AAGGTCGTTT ATTATCGGCT ATCAAAACCT TAGACGAGCG TAGCCAGCAT
ATTCTGCGTG CTCGTTGGTT AGATGATGAT AAAACCACGC TGCAGGAATT GGCAGAAACC
TATCAAGTCT CGGCTGAGCG CATTCGCCAG TTAGAGAAAA ACGCCATGAA CAAGCTTAAG
GCTTGTATGG AAGCCTAA
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| Protein sequence | MTFQTQSMAL TVPQGSSSLE AYIHSVTSMT MLDAETEYEL AKRLQETGDL QAAKQLIMSH
LRFVVHVAKG YSGYGLPQAD LIQEGNIGLM KAVKRFDPDV GVRLVSFAVH WIKAEIHEYV
LKNWRIVKVA TTKAQRKLFF NIRKAKTRLG WFSDDEVAMV AENLGVSKAD VTEMESRMAA
QDPAFDLSSD NDDEQDFAPV HYLEDHSSDL AENIENDNWE SNAQGRLLSA IKTLDERSQH
ILRARWLDDD KTTLQELAET YQVSAERIRQ LEKNAMNKLK ACMEA
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