| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3724 |
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| Symbol | |
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| ID | 4254287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4450091 |
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| End bp | 4452943 |
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| Gene Length | 2853 bp |
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| Protein Length | 950 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638120369 |
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| Product | formate dehydrogenase alpha subunit |
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| Protein accession | YP_735844 |
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| Protein GI | 113972051 |
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| COG category | [C] Energy production and conversion
[R] General function prediction only |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing
[COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTAA CTCGCAAGTC CGATGTCGCC CAAGTGGCCG ACAAACCGAC GTTAGGCATT
AGCCGTCGTC AATTTATGAA GCAAGCAGGT ATTACTACCG GTGGTATCGC AGCAGCTTCT
CTGATGGGTA CTGGCATGAT GCGCCGCGCA GAAGCCAAAG ATGTGCCACA CGACGCGCCG
ATCGAAGTTA AACGTACGAT TTGTAGTGCC TGTGCTGTGG GTTGTGGTCT GTATGCCGAA
GTGCAAAATG GTGTGTGGAC GGGTCAAGAA CCTGCATTCG ATCACCCATT CAATGCTGGC
GGTCACTGCG CTAAGGGTGC TGCACTGCGT GAGCATGGCC ACGGTGAAAA ACGCCTGAAA
TACCCAATGA AATTGGTTGA TGGTAAGTGG AAAAAAATCT CTTGGGAAGA TGCGATTAAC
GAAGTGGGCG ACCAAATGCT CAACATTCGT AAAGAATCAG GCCCAGACTC AGTGTACTTC
ATGGGTAGCG CTAAGTTCTC TAACGAAGGC TGCTATATGT ACCGCAAACT GGCGGCCATG
TGGGGCACAA ACAACGTCGA CCACTCAGCT CGTATTTGTC ACTCTACCAC GGTAGCCGGT
GTTGCTAACA CTTGGGGTTA CGGTGCGCAA ACTAACTCTT TCAACGACAT TCAGAATGCC
AATGCCATCT TCCTGATCGG GGCCAACCCA GCAGAAGCGC ATCCAGTATC TATGCAGCAC
ATTCTGATCG CTAAAGAGAA AAACAACGCG AAAATCATCG TTGTTGACCC ACGTTTCTCT
CGCACTGCGG CGCACTCAGA TCTGCACTGC GCGATTCGTC CAGGTACTGA CATTCCCTTT
ATCTACGGTA TGTTATGGCA CATTTTCGAA AACGGTTGGG AAGATAAGAC CTTTATCCAA
CAACGCGTAT TTGAGATGGA AACCATCCGC GAAGAAGCGA AAAAATTCCC ACCTAAAGAA
GTGGCAAATA TCACTGGCGT AAGTGAAGAA GTCATTTATC AAGCCGCGAA ACTGATGGCG
GAAAACCGTC CAGGTACCGT GATTTGGTGT ATGGGTGGTA CTCAACACCA CGTCGGTAAC
GCTAACACCC GTGCTTACTG TATTCTGCAA TTAGCCTTAG GCAACATGGG CGTTTCTGGC
GGCGGTACTA ACATTTTCCG TGGCCACGAC AACGTACAAG GCGCGACCGA CTTAGGTCTG
CTGTTCGATA ACCTACCAGG TTACTACGGT TTAACCTCAG CCGCTTGGAC TCACTGGACC
CATGTGTGGG ATCTAGATAT GGAGTGGGTG AAGAGCCGCT TCGATCAAAA CGCCTATTTA
GGCAAAGATC CAATGACCAC CCCTGGTATT CCTTGTTCTC GCTGGCACGA TGGCGTGTTA
GAAGACAAGA GCAAGCTGGC ACAGAAAGAC AATATCCGTA TGGCCTTCTT CTGGGGTCAA
TCGGTCAACA CTGAAACCCG TCAACGTGAA GTGCGTGATG CTTTAGACAA GATGGACACA
GTAGTGGTTG TCGACCCATT CCCAACCATG GCGGGTGTGA TGCACCGTCG TAAGAATGGC
GTGTATCTGT TACCTGCTGC GACTCAGTTT GAAACTCAAG GTTCAGTGTC TAACTCAGGC
CGTTCTATCC AATGGCGTGA GCAGGTTATC CAACCTTTAT TCGAGTCAAA AACCGACATC
GAAATTATGT ACCGTTTAGC GCAAAAACTC GGTATTGCCG AGCAATACAC TAAACGCATC
GCCAAAGAAA ACGGCTTACC GGTTATCGAA GAGATCACCC GCGAAATCAA CCGCGGCATG
TGGACCATCG GTATGACAGG TCAAAGCCCT GAGCGTATCA AGCTGCACAC CCAAAACTGG
GGCACTTTCA GCAACAAGAC GCTCGAAGCC GTCGGCGGCC CAGCGAAGGG CGAAACCTAC
GGTTTACCTT GGCCATGTTG GGGCACACCA GAAGCTAAAC ACCCTGGTAC CCAAATTCTG
TATAACCAAT CCAAACACGT TAAAGACGGC GGCGGTAACT TCCGCGCTCG TTACGGCGTT
GAATACAATG GCAAAAACCT ACTGGCTGAA GGCTCTTTCT CTAAAGGTGC CGAGATCCAA
GACGGTTACC CAGAATTTAC CGACAAGCTG CTGAAGCAAC TCGGTTGGTG GGATGACCTG
ACTGCGGAAG AAAAAGCCGA AGCTGAAGGC CGCAACTGGA AGACAGACTT GTCAGGCGGC
ATAGTGCGCG TGGCAATCAA GCACGGTTGT ATTCCATTTG GTAACGCTAA AGCCCGTTGT
ATTGTTTGGA CTTTCCCAGA CCAAGTGCCA GTTCACCGCG AGCCGTTATA CACAGCACGC
CGTGACTTAG TGGCTAAATA CCCAACCTAC GACGATATGC AAGTTCATCG TCTGCCAACA
CTGTACAAGT CAATCCAAGA GAAAGACTTC AGCGGCAAGT ACCCACTGGT ACTGACCTCT
GGTCGTTTAG TGGAATACGA AGGTGGTGGT GAAGAATCTC GTTCTAACCC ATGGCTGGCT
GAGCTTCAAC AGGAAATGTT TGTTGAAATC AACCCAGGTG ACGCAGCCGA CCGCGGTATC
CGCAACGGTG AGTTTGTGTG GTTAGAGGGC GCCGAAGGTG GCCGCATTAA AGTACAAGCC
ATGGTAACAC CACGCGTTAA ACCAGGTGTG ACCTTTATGC CATACCACTT TGCGGGTGTG
ATGCACGGTG AAAGCTTAGC GCCTAACTAT CCTGAGGGCA CTGTGCCTTA CGTTATCGGT
GAATCCGCTA ACACGGCACT GACCTATGGT TATGACCCTG TGACTCAAAT GCAGGAAACC
AAAGCGTCGC TCTGTCAGAT CGTTAAAGCG TAA
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| Protein sequence | MKLTRKSDVA QVADKPTLGI SRRQFMKQAG ITTGGIAAAS LMGTGMMRRA EAKDVPHDAP
IEVKRTICSA CAVGCGLYAE VQNGVWTGQE PAFDHPFNAG GHCAKGAALR EHGHGEKRLK
YPMKLVDGKW KKISWEDAIN EVGDQMLNIR KESGPDSVYF MGSAKFSNEG CYMYRKLAAM
WGTNNVDHSA RICHSTTVAG VANTWGYGAQ TNSFNDIQNA NAIFLIGANP AEAHPVSMQH
ILIAKEKNNA KIIVVDPRFS RTAAHSDLHC AIRPGTDIPF IYGMLWHIFE NGWEDKTFIQ
QRVFEMETIR EEAKKFPPKE VANITGVSEE VIYQAAKLMA ENRPGTVIWC MGGTQHHVGN
ANTRAYCILQ LALGNMGVSG GGTNIFRGHD NVQGATDLGL LFDNLPGYYG LTSAAWTHWT
HVWDLDMEWV KSRFDQNAYL GKDPMTTPGI PCSRWHDGVL EDKSKLAQKD NIRMAFFWGQ
SVNTETRQRE VRDALDKMDT VVVVDPFPTM AGVMHRRKNG VYLLPAATQF ETQGSVSNSG
RSIQWREQVI QPLFESKTDI EIMYRLAQKL GIAEQYTKRI AKENGLPVIE EITREINRGM
WTIGMTGQSP ERIKLHTQNW GTFSNKTLEA VGGPAKGETY GLPWPCWGTP EAKHPGTQIL
YNQSKHVKDG GGNFRARYGV EYNGKNLLAE GSFSKGAEIQ DGYPEFTDKL LKQLGWWDDL
TAEEKAEAEG RNWKTDLSGG IVRVAIKHGC IPFGNAKARC IVWTFPDQVP VHREPLYTAR
RDLVAKYPTY DDMQVHRLPT LYKSIQEKDF SGKYPLVLTS GRLVEYEGGG EESRSNPWLA
ELQQEMFVEI NPGDAADRGI RNGEFVWLEG AEGGRIKVQA MVTPRVKPGV TFMPYHFAGV
MHGESLAPNY PEGTVPYVIG ESANTALTYG YDPVTQMQET KASLCQIVKA
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